miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11018 5' -55.5 NC_002794.1 + 145813 0.66 0.944181
Target:  5'- cGCCGCCGCcGGCggCGAGccGAGCgCGu -3'
miRNA:   3'- uUGGUGGUGuUCGa-GCUC--UUCGgGCu -5'
11018 5' -55.5 NC_002794.1 + 184183 0.66 0.944181
Target:  5'- --aCACCGCGGcGCcCGGcGAGGCCCGc -3'
miRNA:   3'- uugGUGGUGUU-CGaGCU-CUUCGGGCu -5'
11018 5' -55.5 NC_002794.1 + 140310 0.66 0.944181
Target:  5'- aGGCCuGCCGgcGGCUgGAGAAGUCCu- -3'
miRNA:   3'- -UUGG-UGGUguUCGAgCUCUUCGGGcu -5'
11018 5' -55.5 NC_002794.1 + 128095 0.66 0.944181
Target:  5'- cGGCgACgGgGAGCUCGAcggGggGCUCGGc -3'
miRNA:   3'- -UUGgUGgUgUUCGAGCU---CuuCGGGCU- -5'
11018 5' -55.5 NC_002794.1 + 73124 0.66 0.944181
Target:  5'- cACCACCcCcgAGGC-CGAGGAGCUCa- -3'
miRNA:   3'- uUGGUGGuG--UUCGaGCUCUUCGGGcu -5'
11018 5' -55.5 NC_002794.1 + 70273 0.66 0.943281
Target:  5'- aGGCCGCgaaggccggagaGCAGGC-CgGGGggGCCCGGg -3'
miRNA:   3'- -UUGGUGg-----------UGUUCGaG-CUCuuCGGGCU- -5'
11018 5' -55.5 NC_002794.1 + 10629 0.66 0.939585
Target:  5'- cAACaUGCCACGGGCg-GGGAgcggcgcgAGCCCGAc -3'
miRNA:   3'- -UUG-GUGGUGUUCGagCUCU--------UCGGGCU- -5'
11018 5' -55.5 NC_002794.1 + 191589 0.66 0.939585
Target:  5'- uGCCGCC-CAAgucuuccucgccGCUCGAGAA-UCCGAa -3'
miRNA:   3'- uUGGUGGuGUU------------CGAGCUCUUcGGGCU- -5'
11018 5' -55.5 NC_002794.1 + 105611 0.66 0.939585
Target:  5'- cGGCgGUCGuCAGGCUCGGcGAccAGCCCGAg -3'
miRNA:   3'- -UUGgUGGU-GUUCGAGCU-CU--UCGGGCU- -5'
11018 5' -55.5 NC_002794.1 + 59471 0.66 0.939585
Target:  5'- -uCCGCCGCuacCUCGAGGAGuuCCCGc -3'
miRNA:   3'- uuGGUGGUGuucGAGCUCUUC--GGGCu -5'
11018 5' -55.5 NC_002794.1 + 193932 0.66 0.939585
Target:  5'- cGGCCACCGCcGGCUCc---GGCCCc- -3'
miRNA:   3'- -UUGGUGGUGuUCGAGcucuUCGGGcu -5'
11018 5' -55.5 NC_002794.1 + 43330 0.66 0.939585
Target:  5'- aGACgACCACGcAGCgcCGGuuGAAGUCCGAg -3'
miRNA:   3'- -UUGgUGGUGU-UCGa-GCU--CUUCGGGCU- -5'
11018 5' -55.5 NC_002794.1 + 44113 0.66 0.939585
Target:  5'- cGAgCGCCGCAucAGCUCGcGGcaguguagGGCCCGc -3'
miRNA:   3'- -UUgGUGGUGU--UCGAGCuCU--------UCGGGCu -5'
11018 5' -55.5 NC_002794.1 + 60775 0.66 0.938637
Target:  5'- cGCCGCCGCcgucgaacggacGGCUCGGaccaugacGgcGCCCGAc -3'
miRNA:   3'- uUGGUGGUGu-----------UCGAGCU--------CuuCGGGCU- -5'
11018 5' -55.5 NC_002794.1 + 180294 0.66 0.934752
Target:  5'- cGCCGCCGCAacacgccggccGGCgCGAccagacgauGAAGCCCa- -3'
miRNA:   3'- uUGGUGGUGU-----------UCGaGCU---------CUUCGGGcu -5'
11018 5' -55.5 NC_002794.1 + 72416 0.66 0.934752
Target:  5'- cACCGCCGC-GGCggagGAGGAGCCgGc -3'
miRNA:   3'- uUGGUGGUGuUCGag--CUCUUCGGgCu -5'
11018 5' -55.5 NC_002794.1 + 104891 0.66 0.934752
Target:  5'- gGGCCgGCCGCGAggcgccgugcuGCUCGAGcAGGCgCCGc -3'
miRNA:   3'- -UUGG-UGGUGUU-----------CGAGCUC-UUCG-GGCu -5'
11018 5' -55.5 NC_002794.1 + 20157 0.66 0.933757
Target:  5'- cACCGCCGCcuGGCggccccauaccgCGAGA-GCCCGc -3'
miRNA:   3'- uUGGUGGUGu-UCGa-----------GCUCUuCGGGCu -5'
11018 5' -55.5 NC_002794.1 + 20287 0.66 0.932752
Target:  5'- gAACCGCCGgAagaccaagcgcucuGGCUCGAGAuggaccuucgcugGGUCCGc -3'
miRNA:   3'- -UUGGUGGUgU--------------UCGAGCUCU-------------UCGGGCu -5'
11018 5' -55.5 NC_002794.1 + 181416 0.66 0.929681
Target:  5'- cGCCACCGCcauguccgcgAAGCcgucggCGAGGGgccGCCCGGa -3'
miRNA:   3'- uUGGUGGUG----------UUCGa-----GCUCUU---CGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.