miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 190931 0.66 0.52462
Target:  5'- cGGCCCGCaGCCGgUagcacGGCCCcagcagcaccaGCGcCUCg -3'
miRNA:   3'- -CCGGGCG-CGGCgA-----CCGGGc----------CGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 126609 0.66 0.52462
Target:  5'- aGGCCgGCGCCGac-GUCgCGGCGUg-- -3'
miRNA:   3'- -CCGGgCGCGGCgacCGG-GCCGCAgag -5'
11022 3' -66.8 NC_002794.1 + 16504 0.66 0.52462
Target:  5'- --aCCGcCGCCGCcgucCCCGGCGUCg- -3'
miRNA:   3'- ccgGGC-GCGGCGacc-GGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 186006 0.66 0.52462
Target:  5'- gGGCUC-CGCCGCUccgGGCCCGGg----- -3'
miRNA:   3'- -CCGGGcGCGGCGA---CCGGGCCgcagag -5'
11022 3' -66.8 NC_002794.1 + 14652 0.66 0.52462
Target:  5'- cGCCgGCGCCGC-GGCgUCGGUccGaCUCg -3'
miRNA:   3'- cCGGgCGCGGCGaCCG-GGCCG--CaGAG- -5'
11022 3' -66.8 NC_002794.1 + 44418 0.66 0.52462
Target:  5'- cGGCCgGCGCCGagcGGCucgacgacaCCGGCG-Cg- -3'
miRNA:   3'- -CCGGgCGCGGCga-CCG---------GGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 79042 0.66 0.52462
Target:  5'- cGGCCCG-GCCGCU--CCC-GCG-CUCg -3'
miRNA:   3'- -CCGGGCgCGGCGAccGGGcCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 90100 0.66 0.52462
Target:  5'- cGCuCUGCGCCGCggugGGCgCCGuGaGUCUg -3'
miRNA:   3'- cCG-GGCGCGGCGa---CCG-GGC-CgCAGAg -5'
11022 3' -66.8 NC_002794.1 + 184501 0.66 0.52462
Target:  5'- cGCCCGgGCgGCgcgGGCCCcGCG-Cg- -3'
miRNA:   3'- cCGGGCgCGgCGa--CCGGGcCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 184959 0.66 0.52462
Target:  5'- cGGCCCGCgcaGCCGCUcGUCgGGCa---- -3'
miRNA:   3'- -CCGGGCG---CGGCGAcCGGgCCGcagag -5'
11022 3' -66.8 NC_002794.1 + 76311 0.66 0.52372
Target:  5'- gGGCCCGCGCCGgcaaccagucgucCUcccuCCCGGCGg--- -3'
miRNA:   3'- -CCGGGCGCGGC-------------GAcc--GGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 46194 0.66 0.52372
Target:  5'- cGGCaCCGCGCuCGCUcGCcgccguuCCGGCcagCUCg -3'
miRNA:   3'- -CCG-GGCGCG-GCGAcCG-------GGCCGca-GAG- -5'
11022 3' -66.8 NC_002794.1 + 122326 0.66 0.515644
Target:  5'- uGCgCGUGgCGUUGGCCCuGGcCGUC-Cg -3'
miRNA:   3'- cCGgGCGCgGCGACCGGG-CC-GCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 17669 0.66 0.515644
Target:  5'- cGCCaC-CGCCGCcGGCCCcGGCGg--- -3'
miRNA:   3'- cCGG-GcGCGGCGaCCGGG-CCGCagag -5'
11022 3' -66.8 NC_002794.1 + 55510 0.66 0.515644
Target:  5'- cGGuCCUGCGCCacGCcaGCCCGGCGg--- -3'
miRNA:   3'- -CC-GGGCGCGG--CGacCGGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 99412 0.66 0.515644
Target:  5'- cGCCCGcCGUCGCagcagGGUCCGG-GUUUg -3'
miRNA:   3'- cCGGGC-GCGGCGa----CCGGGCCgCAGAg -5'
11022 3' -66.8 NC_002794.1 + 113685 0.66 0.51475
Target:  5'- aGGCCCgccaccgucggcaGCGCCagguuCUGGCUcagggaCGGCGUCg- -3'
miRNA:   3'- -CCGGG-------------CGCGGc----GACCGG------GCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 48073 0.66 0.512964
Target:  5'- uGGCCgGCcagcgggagcagccGCCGCUcG-CCGGCGUCa- -3'
miRNA:   3'- -CCGGgCG--------------CGGCGAcCgGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 9540 0.66 0.512964
Target:  5'- aGCCCGUGCCcgaucucgagauagGCUGGUCUGGuCGacaCUUa -3'
miRNA:   3'- cCGGGCGCGG--------------CGACCGGGCC-GCa--GAG- -5'
11022 3' -66.8 NC_002794.1 + 193741 0.66 0.512964
Target:  5'- cGCCCGCGgcuucggcgagcgaCCGCcGGCCCcGCucgCUCg -3'
miRNA:   3'- cCGGGCGC--------------GGCGaCCGGGcCGca-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.