Results 1 - 20 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11022 | 3' | -66.8 | NC_002794.1 | + | 34056 | 0.66 | 0.510289 |
Target: 5'- cGGCCCGCGCacgacccgccguuccCGCcggcGGCCgGGCagccGUCg- -3' miRNA: 3'- -CCGGGCGCG---------------GCGa---CCGGgCCG----CAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 122326 | 0.66 | 0.515644 |
Target: 5'- uGCgCGUGgCGUUGGCCCuGGcCGUC-Cg -3' miRNA: 3'- cCGgGCGCgGCGACCGGG-CC-GCAGaG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 17669 | 0.66 | 0.515644 |
Target: 5'- cGCCaC-CGCCGCcGGCCCcGGCGg--- -3' miRNA: 3'- cCGG-GcGCGGCGaCCGGG-CCGCagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 55510 | 0.66 | 0.515644 |
Target: 5'- cGGuCCUGCGCCacGCcaGCCCGGCGg--- -3' miRNA: 3'- -CC-GGGCGCGG--CGacCGGGCCGCagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 99412 | 0.66 | 0.515644 |
Target: 5'- cGCCCGcCGUCGCagcagGGUCCGG-GUUUg -3' miRNA: 3'- cCGGGC-GCGGCGa----CCGGGCCgCAGAg -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 193741 | 0.66 | 0.512964 |
Target: 5'- cGCCCGCGgcuucggcgagcgaCCGCcGGCCCcGCucgCUCg -3' miRNA: 3'- cCGGGCGC--------------GGCGaCCGGGcCGca-GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 113685 | 0.66 | 0.51475 |
Target: 5'- aGGCCCgccaccgucggcaGCGCCagguuCUGGCUcagggaCGGCGUCg- -3' miRNA: 3'- -CCGGG-------------CGCGGc----GACCGG------GCCGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 9540 | 0.66 | 0.512964 |
Target: 5'- aGCCCGUGCCcgaucucgagauagGCUGGUCUGGuCGacaCUUa -3' miRNA: 3'- cCGGGCGCGG--------------CGACCGGGCC-GCa--GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 48073 | 0.66 | 0.512964 |
Target: 5'- uGGCCgGCcagcgggagcagccGCCGCUcG-CCGGCGUCa- -3' miRNA: 3'- -CCGGgCG--------------CGGCGAcCgGGCCGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 76311 | 0.66 | 0.52372 |
Target: 5'- gGGCCCGCGCCGgcaaccagucgucCUcccuCCCGGCGg--- -3' miRNA: 3'- -CCGGGCGCGGC-------------GAcc--GGGCCGCagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 46194 | 0.66 | 0.52372 |
Target: 5'- cGGCaCCGCGCuCGCUcGCcgccguuCCGGCcagCUCg -3' miRNA: 3'- -CCG-GGCGCG-GCGAcCG-------GGCCGca-GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 126609 | 0.66 | 0.52462 |
Target: 5'- aGGCCgGCGCCGac-GUCgCGGCGUg-- -3' miRNA: 3'- -CCGGgCGCGGCgacCGG-GCCGCAgag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 184959 | 0.66 | 0.52462 |
Target: 5'- cGGCCCGCgcaGCCGCUcGUCgGGCa---- -3' miRNA: 3'- -CCGGGCG---CGGCGAcCGGgCCGcagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 184501 | 0.66 | 0.52462 |
Target: 5'- cGCCCGgGCgGCgcgGGCCCcGCG-Cg- -3' miRNA: 3'- cCGGGCgCGgCGa--CCGGGcCGCaGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 90100 | 0.66 | 0.52462 |
Target: 5'- cGCuCUGCGCCGCggugGGCgCCGuGaGUCUg -3' miRNA: 3'- cCG-GGCGCGGCGa---CCG-GGC-CgCAGAg -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 79042 | 0.66 | 0.52462 |
Target: 5'- cGGCCCG-GCCGCU--CCC-GCG-CUCg -3' miRNA: 3'- -CCGGGCgCGGCGAccGGGcCGCaGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 44418 | 0.66 | 0.52462 |
Target: 5'- cGGCCgGCGCCGagcGGCucgacgacaCCGGCG-Cg- -3' miRNA: 3'- -CCGGgCGCGGCga-CCG---------GGCCGCaGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 14652 | 0.66 | 0.52462 |
Target: 5'- cGCCgGCGCCGC-GGCgUCGGUccGaCUCg -3' miRNA: 3'- cCGGgCGCGGCGaCCG-GGCCG--CaGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 186006 | 0.66 | 0.52462 |
Target: 5'- gGGCUC-CGCCGCUccgGGCCCGGg----- -3' miRNA: 3'- -CCGGGcGCGGCGA---CCGGGCCgcagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 16504 | 0.66 | 0.52462 |
Target: 5'- --aCCGcCGCCGCcgucCCCGGCGUCg- -3' miRNA: 3'- ccgGGC-GCGGCGacc-GGGCCGCAGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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