miRNA display CGI


Results 41 - 60 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 113685 0.66 0.51475
Target:  5'- aGGCCCgccaccgucggcaGCGCCagguuCUGGCUcagggaCGGCGUCg- -3'
miRNA:   3'- -CCGGG-------------CGCGGc----GACCGG------GCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 193741 0.66 0.512964
Target:  5'- cGCCCGCGgcuucggcgagcgaCCGCcGGCCCcGCucgCUCg -3'
miRNA:   3'- cCGGGCGC--------------GGCGaCCGGGcCGca-GAG- -5'
11022 3' -66.8 NC_002794.1 + 99412 0.66 0.515644
Target:  5'- cGCCCGcCGUCGCagcagGGUCCGG-GUUUg -3'
miRNA:   3'- cCGGGC-GCGGCGa----CCGGGCCgCAGAg -5'
11022 3' -66.8 NC_002794.1 + 55510 0.66 0.515644
Target:  5'- cGGuCCUGCGCCacGCcaGCCCGGCGg--- -3'
miRNA:   3'- -CC-GGGCGCGG--CGacCGGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 17669 0.66 0.515644
Target:  5'- cGCCaC-CGCCGCcGGCCCcGGCGg--- -3'
miRNA:   3'- cCGG-GcGCGGCGaCCGGG-CCGCagag -5'
11022 3' -66.8 NC_002794.1 + 122326 0.66 0.515644
Target:  5'- uGCgCGUGgCGUUGGCCCuGGcCGUC-Cg -3'
miRNA:   3'- cCGgGCGCgGCGACCGGG-CC-GCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 128667 0.67 0.454763
Target:  5'- cGGCCgCGCgaauaaucGCCGCggcGGUCCGGaggCUCg -3'
miRNA:   3'- -CCGG-GCG--------CGGCGa--CCGGGCCgcaGAG- -5'
11022 3' -66.8 NC_002794.1 + 190610 0.67 0.449724
Target:  5'- aGGUCCGCgacaGCCGCaGguucgacucgccguaGCCCGGCGUgUg -3'
miRNA:   3'- -CCGGGCG----CGGCGaC---------------CGGGCCGCAgAg -5'
11022 3' -66.8 NC_002794.1 + 22957 0.67 0.454763
Target:  5'- gGGCCgGCGCCGUUGuCCCcuuucCGUUUCu -3'
miRNA:   3'- -CCGGgCGCGGCGACcGGGcc---GCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 49392 0.67 0.454763
Target:  5'- aGGCCgC-CGCCGUcGGCCaCGGCGg--- -3'
miRNA:   3'- -CCGG-GcGCGGCGaCCGG-GCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 181364 0.67 0.446381
Target:  5'- cGGCCCG-GuuGagggucacgGGCCCGGcCGUCa- -3'
miRNA:   3'- -CCGGGCgCggCga-------CCGGGCC-GCAGag -5'
11022 3' -66.8 NC_002794.1 + 90469 0.67 0.446381
Target:  5'- aGGCCgCGCGCgGCgGGgCCGcCGUCcCg -3'
miRNA:   3'- -CCGG-GCGCGgCGaCCgGGCcGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 90732 0.67 0.454763
Target:  5'- cGGCCC-UGUCGCUGuGCgaCCGGuCGUCg- -3'
miRNA:   3'- -CCGGGcGCGGCGAC-CG--GGCC-GCAGag -5'
11022 3' -66.8 NC_002794.1 + 84759 0.67 0.454763
Target:  5'- cGGCCgCGagaggGCCGUccgaGGCCCGGCccggCUCu -3'
miRNA:   3'- -CCGG-GCg----CGGCGa---CCGGGCCGca--GAG- -5'
11022 3' -66.8 NC_002794.1 + 108201 0.67 0.46323
Target:  5'- cGGCgCUGCGCCGCc-GCgCCGGC--CUCg -3'
miRNA:   3'- -CCG-GGCGCGGCGacCG-GGCCGcaGAG- -5'
11022 3' -66.8 NC_002794.1 + 49254 0.67 0.46323
Target:  5'- cGCCCGCGCacccacgacgggCGCUccaacGGCCCgGGCGcCg- -3'
miRNA:   3'- cCGGGCGCG------------GCGA-----CCGGG-CCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 122214 0.67 0.46323
Target:  5'- uGCCgGCGCCGCUacgauaagcGGCgCCGGaCG-CUg -3'
miRNA:   3'- cCGGgCGCGGCGA---------CCG-GGCC-GCaGAg -5'
11022 3' -66.8 NC_002794.1 + 184033 0.67 0.46323
Target:  5'- cGGCaCCGCGCgcagcgcgcgguCGCgGGCCgCGGCGa--- -3'
miRNA:   3'- -CCG-GGCGCG------------GCGaCCGG-GCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 115095 0.67 0.46323
Target:  5'- cGCCCGCaGCCGC-GcGUCCG-CGUCgUCa -3'
miRNA:   3'- cCGGGCG-CGGCGaC-CGGGCcGCAG-AG- -5'
11022 3' -66.8 NC_002794.1 + 123248 0.67 0.446381
Target:  5'- aGCCUGUGCCacuuucgccgGCUGGUCCGGgccgcgguCGUCg- -3'
miRNA:   3'- cCGGGCGCGG----------CGACCGGGCC--------GCAGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.