miRNA display CGI


Results 81 - 100 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 49392 0.67 0.454763
Target:  5'- aGGCCgC-CGCCGUcGGCCaCGGCGg--- -3'
miRNA:   3'- -CCGG-GcGCGGCGaCCGG-GCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 22957 0.67 0.454763
Target:  5'- gGGCCgGCGCCGUUGuCCCcuuucCGUUUCu -3'
miRNA:   3'- -CCGGgCGCGGCGACcGGGcc---GCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 126390 0.67 0.438086
Target:  5'- gGGCCUGCGCgGCggcGuGCgCGGCgGUCg- -3'
miRNA:   3'- -CCGGGCGCGgCGa--C-CGgGCCG-CAGag -5'
11022 3' -66.8 NC_002794.1 + 145516 0.68 0.375082
Target:  5'- gGGUgCGCGagGCcGGCCCGaGCGcCUCg -3'
miRNA:   3'- -CCGgGCGCggCGaCCGGGC-CGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 58063 0.68 0.375082
Target:  5'- cGGCCCcgGCgGCgGCgggacgggcGGCCCGGCGcccgcgCUCg -3'
miRNA:   3'- -CCGGG--CG-CGgCGa--------CCGGGCCGCa-----GAG- -5'
11022 3' -66.8 NC_002794.1 + 45930 0.68 0.375082
Target:  5'- aGGCUCGCGCUuCcccGCCCGGUgaccGUCUCu -3'
miRNA:   3'- -CCGGGCGCGGcGac-CGGGCCG----CAGAG- -5'
11022 3' -66.8 NC_002794.1 + 19529 0.68 0.367648
Target:  5'- cGCCgGCGCgGCgcGGCCCgccGGUGUCg- -3'
miRNA:   3'- cCGGgCGCGgCGa-CCGGG---CCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 43797 0.68 0.367648
Target:  5'- cGUCCGaccCGCCGCUccgGGCCCaGGC-UCUCc -3'
miRNA:   3'- cCGGGC---GCGGCGA---CCGGG-CCGcAGAG- -5'
11022 3' -66.8 NC_002794.1 + 116978 0.68 0.375082
Target:  5'- gGGCCCaGCagGUCGUUcGCCguccgCGGCGUCUCg -3'
miRNA:   3'- -CCGGG-CG--CGGCGAcCGG-----GCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 186949 0.68 0.382616
Target:  5'- cGGCCCccGgGCCGCUGGCC-GcCGcCUCc -3'
miRNA:   3'- -CCGGG--CgCGGCGACCGGgCcGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 58338 0.68 0.390251
Target:  5'- uGCUCGUcgggaaccuGCCGCUcGGCCUGGCGcCg- -3'
miRNA:   3'- cCGGGCG---------CGGCGA-CCGGGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 21870 0.68 0.405816
Target:  5'- cGGUCCGCGagGCcGGCCgCGGgGUgUCc -3'
miRNA:   3'- -CCGGGCGCggCGaCCGG-GCCgCAgAG- -5'
11022 3' -66.8 NC_002794.1 + 8144 0.68 0.408975
Target:  5'- cGGCgaCgGCaCCGCUucuccuucucccccgGGCCCGGCGUCcCg -3'
miRNA:   3'- -CCG--GgCGcGGCGA---------------CCGGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 151775 0.68 0.397985
Target:  5'- uGGagaCCGCGCCGCUGcacgccagacGCCgGGUGguguacgagCUCa -3'
miRNA:   3'- -CCg--GGCGCGGCGAC----------CGGgCCGCa--------GAG- -5'
11022 3' -66.8 NC_002794.1 + 153926 0.68 0.38795
Target:  5'- aGGUCCGCGaucgccgcggacacUCGCuggcucuacccUGGCCCGGCGaCUa -3'
miRNA:   3'- -CCGGGCGC--------------GGCG-----------ACCGGGCCGCaGAg -5'
11022 3' -66.8 NC_002794.1 + 53313 0.68 0.397207
Target:  5'- cGGCCgGCGCCGCgagaucGGCucgaaccgcaccuCCGGCGcC-Ca -3'
miRNA:   3'- -CCGGgCGCGGCGa-----CCG-------------GGCCGCaGaG- -5'
11022 3' -66.8 NC_002794.1 + 17966 0.69 0.360316
Target:  5'- cGCCCGgGCCGUgaGCCUGGCGcC-Ca -3'
miRNA:   3'- cCGGGCgCGGCGacCGGGCCGCaGaG- -5'
11022 3' -66.8 NC_002794.1 + 189052 0.69 0.360316
Target:  5'- gGGCUgCGCGUCGCgua--CGGCGUCUCg -3'
miRNA:   3'- -CCGG-GCGCGGCGaccggGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 136707 0.69 0.360316
Target:  5'- cGCCCgGUGCaggCGCcGGuCCCGGCGUC-Ca -3'
miRNA:   3'- cCGGG-CGCG---GCGaCC-GGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 76460 0.69 0.353087
Target:  5'- cGCCCGCcccuccaccGuCCGCcGGCCCGGCcgcagCUCc -3'
miRNA:   3'- cCGGGCG---------C-GGCGaCCGGGCCGca---GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.