miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 49011 0.8 0.056551
Target:  5'- -uCCCGCGCCGCggcGGCCgCGGCGUCg- -3'
miRNA:   3'- ccGGGCGCGGCGa--CCGG-GCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 194818 0.79 0.072352
Target:  5'- aGCCgcagcgacgCGCGCuCGC-GGCCCGGCGUCUCc -3'
miRNA:   3'- cCGG---------GCGCG-GCGaCCGGGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 68938 0.78 0.087968
Target:  5'- cGCCCGCggGCCGC-GGCgCCGGCGcCUCu -3'
miRNA:   3'- cCGGGCG--CGGCGaCCG-GGCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 141593 0.77 0.099304
Target:  5'- cGCCCGCGUCGCcgggcGGCUCGGCGaccggCUCg -3'
miRNA:   3'- cCGGGCGCGGCGa----CCGGGCCGCa----GAG- -5'
11022 3' -66.8 NC_002794.1 + 63912 0.77 0.106755
Target:  5'- cGCUCGCGCCGCgaccgccGCCCGGCcggcgaGUCUCg -3'
miRNA:   3'- cCGGGCGCGGCGac-----CGGGCCG------CAGAG- -5'
11022 3' -66.8 NC_002794.1 + 14516 0.77 0.101732
Target:  5'- cGGCgCUcgugGCGCCGCUcGGCCaCGGCGcUCUCg -3'
miRNA:   3'- -CCG-GG----CGCGGCGA-CCGG-GCCGC-AGAG- -5'
11022 3' -66.8 NC_002794.1 + 84172 0.76 0.117507
Target:  5'- cGGCCCaGCGCUc--GGCCCGGCG-CUCg -3'
miRNA:   3'- -CCGGG-CGCGGcgaCCGGGCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 98251 0.76 0.126225
Target:  5'- cGGCCacauCGCCGa-GGCCUGGUGUCUCg -3'
miRNA:   3'- -CCGGgc--GCGGCgaCCGGGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 183280 0.76 0.123254
Target:  5'- aGCCCaccGCGCgGaucgGGCCCGGCGUCUg -3'
miRNA:   3'- cCGGG---CGCGgCga--CCGGGCCGCAGAg -5'
11022 3' -66.8 NC_002794.1 + 44730 0.75 0.129262
Target:  5'- cGGCCgGCGCCGCcggagGGCUaagaCGGCGaCUCg -3'
miRNA:   3'- -CCGGgCGCGGCGa----CCGG----GCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 99801 0.75 0.138781
Target:  5'- aGCgCGCGCCGCgGGCgCCGGCGcCgUCg -3'
miRNA:   3'- cCGgGCGCGGCGaCCG-GGCCGCaG-AG- -5'
11022 3' -66.8 NC_002794.1 + 112240 0.75 0.132052
Target:  5'- aGGgCCGCcgcgaacGCCGCcGGCgggaCCGGCGUCUCg -3'
miRNA:   3'- -CCgGGCG-------CGGCGaCCG----GGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 116893 0.74 0.156084
Target:  5'- cGCCgGCGCCGuCUccggcggccGGUCCGGCGUCg- -3'
miRNA:   3'- cCGGgCGCGGC-GA---------CCGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 80523 0.74 0.152474
Target:  5'- cGGCgCGCGaCGcCUGGCaCCGGCGcCUCu -3'
miRNA:   3'- -CCGgGCGCgGC-GACCG-GGCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 181533 0.74 0.167381
Target:  5'- cGCCCGcCGCCgGC-GGgCCGGCGcUCUCg -3'
miRNA:   3'- cCGGGC-GCGG-CGaCCgGGCCGC-AGAG- -5'
11022 3' -66.8 NC_002794.1 + 67032 0.74 0.159771
Target:  5'- cGGCUCcCGCCGCgucgcGGaCCCGGCGUC-Cg -3'
miRNA:   3'- -CCGGGcGCGGCGa----CC-GGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 140310 0.73 0.183161
Target:  5'- aGGCCUGCcgGCgGCUGGagaagucCuuGGCGUCUCu -3'
miRNA:   3'- -CCGGGCG--CGgCGACC-------GggCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 92330 0.73 0.175315
Target:  5'- gGGCCCGgGCgGgC-GGCUCGGCGUCa- -3'
miRNA:   3'- -CCGGGCgCGgC-GaCCGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 56580 0.73 0.196628
Target:  5'- cGCCCGCGCCGC-GGCgcccgccgCCGGCcucCUCa -3'
miRNA:   3'- cCGGGCGCGGCGaCCG--------GGCCGca-GAG- -5'
11022 3' -66.8 NC_002794.1 + 107751 0.73 0.192192
Target:  5'- cGCUucgCGCGCCGCUGGCUgGaGCGcgCUCg -3'
miRNA:   3'- cCGG---GCGCGGCGACCGGgC-CGCa-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.