Results 21 - 40 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11022 | 3' | -66.8 | NC_002794.1 | + | 53781 | 0.73 | 0.196628 |
Target: 5'- cGCCCGCGaCGC--GCCCGGCGgguuUCUCg -3' miRNA: 3'- cCGGGCGCgGCGacCGGGCCGC----AGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 56580 | 0.73 | 0.196628 |
Target: 5'- cGCCCGCGCCGC-GGCgcccgccgCCGGCcucCUCa -3' miRNA: 3'- cCGGGCGCGGCGaCCG--------GGCCGca-GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 92330 | 0.73 | 0.175315 |
Target: 5'- gGGCCCGgGCgGgC-GGCUCGGCGUCa- -3' miRNA: 3'- -CCGGGCgCGgC-GaCCGGGCCGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 69811 | 0.72 | 0.235419 |
Target: 5'- aGCCCGcCGCCGCga--CCGGCGUC-Cg -3' miRNA: 3'- cCGGGC-GCGGCGaccgGGCCGCAGaG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 118265 | 0.72 | 0.205769 |
Target: 5'- cGGCCgGgGCgGC-GGCgCCGGCGUCg- -3' miRNA: 3'- -CCGGgCgCGgCGaCCG-GGCCGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 100307 | 0.72 | 0.220169 |
Target: 5'- cGCCUcCGCCGCUGGCacgcgcggCCGGCGcacggccggcUCUCg -3' miRNA: 3'- cCGGGcGCGGCGACCG--------GGCCGC----------AGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 104903 | 0.72 | 0.23024 |
Target: 5'- aGGCgCCGUGCUGCUcgagcaGGCgCCG-CGUCUCu -3' miRNA: 3'- -CCG-GGCGCGGCGA------CCG-GGCcGCAGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 71772 | 0.72 | 0.220169 |
Target: 5'- cGGUCCGCGCCGUc-GCgCGGCGagUCg -3' miRNA: 3'- -CCGGGCGCGGCGacCGgGCCGCagAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 113534 | 0.72 | 0.218691 |
Target: 5'- cGGCUCgGCGUCGCcGGCCCGGagcaggcgccggacCGUCUg -3' miRNA: 3'- -CCGGG-CGCGGCGaCCGGGCC--------------GCAGAg -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 187591 | 0.72 | 0.215276 |
Target: 5'- cGGCCgC-CGUCGCgacGCCCGGCGUCg- -3' miRNA: 3'- -CCGG-GcGCGGCGac-CGGGCCGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 63372 | 0.72 | 0.225156 |
Target: 5'- cGCCCGCGCCGCUGcCCCGcCGccccgcugCUCc -3' miRNA: 3'- cCGGGCGCGGCGACcGGGCcGCa-------GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 149154 | 0.72 | 0.225156 |
Target: 5'- uGCuUCGCGCCcguGCUGGCCuCGGgGUUUCu -3' miRNA: 3'- cCG-GGCGCGG---CGACCGG-GCCgCAGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 151587 | 0.72 | 0.220169 |
Target: 5'- cGGCgCGCGCCGCcgccgcgGGCCC-GCGguucCUCg -3' miRNA: 3'- -CCGgGCGCGGCGa------CCGGGcCGCa---GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 156402 | 0.72 | 0.210476 |
Target: 5'- cGGCCgGCGCCGC-GGCCgCGGCc---- -3' miRNA: 3'- -CCGGgCGCGGCGaCCGG-GCCGcagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 109521 | 0.72 | 0.220169 |
Target: 5'- cGGCCCGCGCUcguucgGCgucgGGCCgGGCGg--- -3' miRNA: 3'- -CCGGGCGCGG------CGa---CCGGgCCGCagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 194516 | 0.71 | 0.246072 |
Target: 5'- cGGCCCGCguGCCGCcGGCCCaGCa---- -3' miRNA: 3'- -CCGGGCG--CGGCGaCCGGGcCGcagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 80793 | 0.71 | 0.251546 |
Target: 5'- -aCCUGCGCCGCgUGcuccuccacGCCCGGCGUgagCUCu -3' miRNA: 3'- ccGGGCGCGGCG-AC---------CGGGCCGCA---GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 85048 | 0.71 | 0.268573 |
Target: 5'- gGGCCCGCGCuCGaCgaccGGCCaCGccGCGUCUg -3' miRNA: 3'- -CCGGGCGCG-GC-Ga---CCGG-GC--CGCAGAg -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 150422 | 0.71 | 0.257121 |
Target: 5'- uGGCCCGCGagGCUGGaCCUGGaGUC-Cg -3' miRNA: 3'- -CCGGGCGCggCGACC-GGGCCgCAGaG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 12010 | 0.71 | 0.262796 |
Target: 5'- uGGaCUgaugUGCGCCGCcGGCCCGgGCGUC-Cg -3' miRNA: 3'- -CC-GG----GCGCGGCGaCCGGGC-CGCAGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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