miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 194516 0.71 0.246072
Target:  5'- cGGCCCGCguGCCGCcGGCCCaGCa---- -3'
miRNA:   3'- -CCGGGCG--CGGCGaCCGGGcCGcagag -5'
11022 3' -66.8 NC_002794.1 + 180287 0.71 0.251546
Target:  5'- cGGCCCGCGCCGCcgcaacacgccGGC-CGGCG-Cg- -3'
miRNA:   3'- -CCGGGCGCGGCGa----------CCGgGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 70327 0.7 0.280433
Target:  5'- cGCCCGCGaagaCGCcgacGGCCgGGCGcccgCUCg -3'
miRNA:   3'- cCGGGCGCg---GCGa---CCGGgCCGCa---GAG- -5'
11022 3' -66.8 NC_002794.1 + 62745 0.7 0.280433
Target:  5'- cGCCCGCgGCCGuCUcgcuccGGCuCCGGCuGUUUCg -3'
miRNA:   3'- cCGGGCG-CGGC-GA------CCG-GGCCG-CAGAG- -5'
11022 3' -66.8 NC_002794.1 + 186879 0.7 0.274451
Target:  5'- gGGCUCG-GCuCGC-GGUCCGGCGUC-Cg -3'
miRNA:   3'- -CCGGGCgCG-GCGaCCGGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 137656 0.7 0.274451
Target:  5'- gGGCCUccgGCGCCGCUGGUgCGGaCG-Ca- -3'
miRNA:   3'- -CCGGG---CGCGGCGACCGgGCC-GCaGag -5'
11022 3' -66.8 NC_002794.1 + 89913 0.7 0.280433
Target:  5'- cGGCCCGUuggcgcuagaGgCGCgGGCgCCGGCuUCUCg -3'
miRNA:   3'- -CCGGGCG----------CgGCGaCCG-GGCCGcAGAG- -5'
11022 3' -66.8 NC_002794.1 + 104421 0.7 0.286517
Target:  5'- cGGCCuCG-GCCGCcGGCCCGGaCGcCg- -3'
miRNA:   3'- -CCGG-GCgCGGCGaCCGGGCC-GCaGag -5'
11022 3' -66.8 NC_002794.1 + 68899 0.7 0.311893
Target:  5'- cGGCUaccgauCGCGUCGCggGGCUcgCGGCGUcCUCg -3'
miRNA:   3'- -CCGG------GCGCGGCGa-CCGG--GCCGCA-GAG- -5'
11022 3' -66.8 NC_002794.1 + 80464 0.7 0.301542
Target:  5'- cGGCCCGCuGCCcgucuuccgcgucgaGCUGGCgcaccaCCGGCacGUCUUc -3'
miRNA:   3'- -CCGGGCG-CGG---------------CGACCG------GGCCG--CAGAG- -5'
11022 3' -66.8 NC_002794.1 + 191532 0.7 0.311238
Target:  5'- cGGCCCGCgccucccGCCGCagucgGGUCCGG-GUC-Ca -3'
miRNA:   3'- -CCGGGCG-------CGGCGa----CCGGGCCgCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 134153 0.7 0.311893
Target:  5'- cGGUCCGUGuuGCUGGCCgUGGCc---- -3'
miRNA:   3'- -CCGGGCGCggCGACCGG-GCCGcagag -5'
11022 3' -66.8 NC_002794.1 + 114186 0.7 0.311238
Target:  5'- uGGCCagGCGCaGC-GGCgccacggCCGGCGUCUCc -3'
miRNA:   3'- -CCGGg-CGCGgCGaCCG-------GGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 12420 0.7 0.305392
Target:  5'- cGGCgCGCGCCGaCUGGCagcuguCCcGCGUCa- -3'
miRNA:   3'- -CCGgGCGCGGC-GACCG------GGcCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 124749 0.7 0.298996
Target:  5'- -aCCCGUGCCGCU-GCUCGGCaacuuUCUCu -3'
miRNA:   3'- ccGGGCGCGGCGAcCGGGCCGc----AGAG- -5'
11022 3' -66.8 NC_002794.1 + 107240 0.7 0.298996
Target:  5'- gGGgCgGCGUCGCggaccUGGCCCGGCGg--- -3'
miRNA:   3'- -CCgGgCGCGGCG-----ACCGGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 181759 0.7 0.285904
Target:  5'- aGCCCGCugacGCCGaUGGCgCCGcgccgccGCGUCUCg -3'
miRNA:   3'- cCGGGCG----CGGCgACCG-GGC-------CGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 99611 0.7 0.292705
Target:  5'- cGCUCGCGCCGCcucGGCCC--CGUUUCu -3'
miRNA:   3'- cCGGGCGCGGCGa--CCGGGccGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 137323 0.7 0.298362
Target:  5'- cGGuUCCGCGgaagguuCCGCggacGGCUCGGCGUCgUCg -3'
miRNA:   3'- -CC-GGGCGC-------GGCGa---CCGGGCCGCAG-AG- -5'
11022 3' -66.8 NC_002794.1 + 146985 0.7 0.311893
Target:  5'- aGGUCgGCGCCGCcGGCCgacgucggcggCGGCGgccgccggcgCUCg -3'
miRNA:   3'- -CCGGgCGCGGCGaCCGG-----------GCCGCa---------GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.