miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 136707 0.69 0.360316
Target:  5'- cGCCCgGUGCaggCGCcGGuCCCGGCGUC-Ca -3'
miRNA:   3'- cCGGG-CGCG---GCGaCC-GGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 37943 0.69 0.325207
Target:  5'- cGCCCGUGCCucgGCgacucGCUCGGCGgCUCg -3'
miRNA:   3'- cCGGGCGCGG---CGac---CGGGCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 55620 0.69 0.345961
Target:  5'- aGCCCGUGCaCGCUGGCcagcacgcgggCCGGCa---- -3'
miRNA:   3'- cCGGGCGCG-GCGACCG-----------GGCCGcagag -5'
11022 3' -66.8 NC_002794.1 + 189052 0.69 0.360316
Target:  5'- gGGCUgCGCGUCGCgua--CGGCGUCUCg -3'
miRNA:   3'- -CCGG-GCGCGGCGaccggGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 52758 0.69 0.32792
Target:  5'- aGuaCCGCGCCGC-GGCCCGGgccgcgggaucgugaCG-CUCg -3'
miRNA:   3'- -CcgGGCGCGGCGaCCGGGCC---------------GCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 60174 0.69 0.318497
Target:  5'- aGCCCGCGCgggCGCUcGGCCUGccucuucaGCGUCg- -3'
miRNA:   3'- cCGGGCGCG---GCGA-CCGGGC--------CGCAGag -5'
11022 3' -66.8 NC_002794.1 + 193176 0.69 0.325207
Target:  5'- aGCCCGCGCCGC--GCCa-GCGUgUCc -3'
miRNA:   3'- cCGGGCGCGGCGacCGGgcCGCAgAG- -5'
11022 3' -66.8 NC_002794.1 + 76460 0.69 0.353087
Target:  5'- cGCCCGCcccuccaccGuCCGCcGGCCCGGCcgcagCUCc -3'
miRNA:   3'- cCGGGCG---------C-GGCGaCCGGGCCGca---GAG- -5'
11022 3' -66.8 NC_002794.1 + 88926 0.69 0.353087
Target:  5'- uGCCCGCGgUGCggcgaUGGCgCGGUGUaaCUCg -3'
miRNA:   3'- cCGGGCGCgGCG-----ACCGgGCCGCA--GAG- -5'
11022 3' -66.8 NC_002794.1 + 107190 0.69 0.325207
Target:  5'- cGGCgCCGcCGCCGCcggccucGCCCGGCGcCg- -3'
miRNA:   3'- -CCG-GGC-GCGGCGac-----CGGGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 12166 0.69 0.32792
Target:  5'- cGCCCGgaucgucgccgccgaCGCCGCcgcGGCCgGGCGccgCUCg -3'
miRNA:   3'- cCGGGC---------------GCGGCGa--CCGGgCCGCa--GAG- -5'
11022 3' -66.8 NC_002794.1 + 50790 0.69 0.345961
Target:  5'- cGGgCgGCGCCucCUcGCCCGGCGUCg- -3'
miRNA:   3'- -CCgGgCGCGGc-GAcCGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 130644 0.69 0.345961
Target:  5'- cGGCCCGCccgccgccccGCCGCcGGCCgCGG-G-CUCc -3'
miRNA:   3'- -CCGGGCG----------CGGCGaCCGG-GCCgCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 141295 0.69 0.353087
Target:  5'- aGCCacacguggCGCGCCgGCgacGGCaCCGGCGUCg- -3'
miRNA:   3'- cCGG--------GCGCGG-CGa--CCG-GGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 17966 0.69 0.360316
Target:  5'- cGCCCGgGCCGUgaGCCUGGCGcC-Ca -3'
miRNA:   3'- cCGGGCgCGGCGacCGGGCCGCaGaG- -5'
11022 3' -66.8 NC_002794.1 + 67836 0.69 0.318497
Target:  5'- cGGCCCGcCGUCGCccGGCgCCGccgcGCGUCa- -3'
miRNA:   3'- -CCGGGC-GCGGCGa-CCG-GGC----CGCAGag -5'
11022 3' -66.8 NC_002794.1 + 144899 0.69 0.318497
Target:  5'- cGCUCGCGCCGCUGGgcCCCGcCGcCg- -3'
miRNA:   3'- cCGGGCGCGGCGACC--GGGCcGCaGag -5'
11022 3' -66.8 NC_002794.1 + 189458 0.69 0.318497
Target:  5'- cGGCCagcaCGCGCCGaaaGGCCgCGgGCGUCg- -3'
miRNA:   3'- -CCGG----GCGCGGCga-CCGG-GC-CGCAGag -5'
11022 3' -66.8 NC_002794.1 + 44287 0.69 0.345961
Target:  5'- aGUCCGCGcCCGCcGGgCCGGCGa--- -3'
miRNA:   3'- cCGGGCGC-GGCGaCCgGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 62287 0.69 0.345961
Target:  5'- cGGCCUGCuGCCGCUccGaGCCCGcGCG-Ca- -3'
miRNA:   3'- -CCGGGCG-CGGCGA--C-CGGGC-CGCaGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.