miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 107751 0.73 0.192192
Target:  5'- cGCUucgCGCGCCGCUGGCUgGaGCGcgCUCg -3'
miRNA:   3'- cCGG---GCGCGGCGACCGGgC-CGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 53781 0.73 0.196628
Target:  5'- cGCCCGCGaCGC--GCCCGGCGgguuUCUCg -3'
miRNA:   3'- cCGGGCGCgGCGacCGGGCCGC----AGAG- -5'
11022 3' -66.8 NC_002794.1 + 56580 0.73 0.196628
Target:  5'- cGCCCGCGCCGC-GGCgcccgccgCCGGCcucCUCa -3'
miRNA:   3'- cCGGGCGCGGCGaCCG--------GGCCGca-GAG- -5'
11022 3' -66.8 NC_002794.1 + 118265 0.72 0.205769
Target:  5'- cGGCCgGgGCgGC-GGCgCCGGCGUCg- -3'
miRNA:   3'- -CCGGgCgCGgCGaCCG-GGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 156402 0.72 0.210476
Target:  5'- cGGCCgGCGCCGC-GGCCgCGGCc---- -3'
miRNA:   3'- -CCGGgCGCGGCGaCCGG-GCCGcagag -5'
11022 3' -66.8 NC_002794.1 + 187591 0.72 0.215276
Target:  5'- cGGCCgC-CGUCGCgacGCCCGGCGUCg- -3'
miRNA:   3'- -CCGG-GcGCGGCGac-CGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 113534 0.72 0.218691
Target:  5'- cGGCUCgGCGUCGCcGGCCCGGagcaggcgccggacCGUCUg -3'
miRNA:   3'- -CCGGG-CGCGGCGaCCGGGCC--------------GCAGAg -5'
11022 3' -66.8 NC_002794.1 + 109521 0.72 0.220169
Target:  5'- cGGCCCGCGCUcguucgGCgucgGGCCgGGCGg--- -3'
miRNA:   3'- -CCGGGCGCGG------CGa---CCGGgCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 151587 0.72 0.220169
Target:  5'- cGGCgCGCGCCGCcgccgcgGGCCC-GCGguucCUCg -3'
miRNA:   3'- -CCGgGCGCGGCGa------CCGGGcCGCa---GAG- -5'
11022 3' -66.8 NC_002794.1 + 100307 0.72 0.220169
Target:  5'- cGCCUcCGCCGCUGGCacgcgcggCCGGCGcacggccggcUCUCg -3'
miRNA:   3'- cCGGGcGCGGCGACCG--------GGCCGC----------AGAG- -5'
11022 3' -66.8 NC_002794.1 + 71772 0.72 0.220169
Target:  5'- cGGUCCGCGCCGUc-GCgCGGCGagUCg -3'
miRNA:   3'- -CCGGGCGCGGCGacCGgGCCGCagAG- -5'
11022 3' -66.8 NC_002794.1 + 63372 0.72 0.225156
Target:  5'- cGCCCGCGCCGCUGcCCCGcCGccccgcugCUCc -3'
miRNA:   3'- cCGGGCGCGGCGACcGGGCcGCa-------GAG- -5'
11022 3' -66.8 NC_002794.1 + 149154 0.72 0.225156
Target:  5'- uGCuUCGCGCCcguGCUGGCCuCGGgGUUUCu -3'
miRNA:   3'- cCG-GGCGCGG---CGACCGG-GCCgCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 104903 0.72 0.23024
Target:  5'- aGGCgCCGUGCUGCUcgagcaGGCgCCG-CGUCUCu -3'
miRNA:   3'- -CCG-GGCGCGGCGA------CCG-GGCcGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 69811 0.72 0.235419
Target:  5'- aGCCCGcCGCCGCga--CCGGCGUC-Cg -3'
miRNA:   3'- cCGGGC-GCGGCGaccgGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 35556 0.71 0.240696
Target:  5'- cGCUCGCGCgCGCgcguggUGGCCCaGGCGuUCUUc -3'
miRNA:   3'- cCGGGCGCG-GCG------ACCGGG-CCGC-AGAG- -5'
11022 3' -66.8 NC_002794.1 + 194516 0.71 0.246072
Target:  5'- cGGCCCGCguGCCGCcGGCCCaGCa---- -3'
miRNA:   3'- -CCGGGCG--CGGCGaCCGGGcCGcagag -5'
11022 3' -66.8 NC_002794.1 + 180287 0.71 0.251546
Target:  5'- cGGCCCGCGCCGCcgcaacacgccGGC-CGGCG-Cg- -3'
miRNA:   3'- -CCGGGCGCGGCGa----------CCGgGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 80793 0.71 0.251546
Target:  5'- -aCCUGCGCCGCgUGcuccuccacGCCCGGCGUgagCUCu -3'
miRNA:   3'- ccGGGCGCGGCG-AC---------CGGGCCGCA---GAG- -5'
11022 3' -66.8 NC_002794.1 + 150422 0.71 0.257121
Target:  5'- uGGCCCGCGagGCUGGaCCUGGaGUC-Cg -3'
miRNA:   3'- -CCGGGCGCggCGACC-GGGCCgCAGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.