Results 61 - 80 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11022 | 3' | -66.8 | NC_002794.1 | + | 189458 | 0.69 | 0.318497 |
Target: 5'- cGGCCagcaCGCGCCGaaaGGCCgCGgGCGUCg- -3' miRNA: 3'- -CCGG----GCGCGGCga-CCGG-GC-CGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 144899 | 0.69 | 0.318497 |
Target: 5'- cGCUCGCGCCGCUGGgcCCCGcCGcCg- -3' miRNA: 3'- cCGGGCGCGGCGACC--GGGCcGCaGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 67836 | 0.69 | 0.318497 |
Target: 5'- cGGCCCGcCGUCGCccGGCgCCGccgcGCGUCa- -3' miRNA: 3'- -CCGGGC-GCGGCGa-CCG-GGC----CGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 60174 | 0.69 | 0.318497 |
Target: 5'- aGCCCGCGCgggCGCUcGGCCUGccucuucaGCGUCg- -3' miRNA: 3'- cCGGGCGCG---GCGA-CCGGGC--------CGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 37943 | 0.69 | 0.325207 |
Target: 5'- cGCCCGUGCCucgGCgacucGCUCGGCGgCUCg -3' miRNA: 3'- cCGGGCGCGG---CGac---CGGGCCGCaGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 107190 | 0.69 | 0.325207 |
Target: 5'- cGGCgCCGcCGCCGCcggccucGCCCGGCGcCg- -3' miRNA: 3'- -CCG-GGC-GCGGCGac-----CGGGCCGCaGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 193176 | 0.69 | 0.325207 |
Target: 5'- aGCCCGCGCCGC--GCCa-GCGUgUCc -3' miRNA: 3'- cCGGGCGCGGCGacCGGgcCGCAgAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 52758 | 0.69 | 0.32792 |
Target: 5'- aGuaCCGCGCCGC-GGCCCGGgccgcgggaucgugaCG-CUCg -3' miRNA: 3'- -CcgGGCGCGGCGaCCGGGCC---------------GCaGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 12166 | 0.69 | 0.32792 |
Target: 5'- cGCCCGgaucgucgccgccgaCGCCGCcgcGGCCgGGCGccgCUCg -3' miRNA: 3'- cCGGGC---------------GCGGCGa--CCGGgCCGCa--GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 143274 | 0.69 | 0.338939 |
Target: 5'- cGGCCCgGCGCCGgccGCUCGGgGUCg- -3' miRNA: 3'- -CCGGG-CGCGGCgacCGGGCCgCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 44287 | 0.69 | 0.345961 |
Target: 5'- aGUCCGCGcCCGCcGGgCCGGCGa--- -3' miRNA: 3'- cCGGGCGC-GGCGaCCgGGCCGCagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 130644 | 0.69 | 0.345961 |
Target: 5'- cGGCCCGCccgccgccccGCCGCcGGCCgCGG-G-CUCc -3' miRNA: 3'- -CCGGGCG----------CGGCGaCCGG-GCCgCaGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 50790 | 0.69 | 0.345961 |
Target: 5'- cGGgCgGCGCCucCUcGCCCGGCGUCg- -3' miRNA: 3'- -CCgGgCGCGGc-GAcCGGGCCGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 55620 | 0.69 | 0.345961 |
Target: 5'- aGCCCGUGCaCGCUGGCcagcacgcgggCCGGCa---- -3' miRNA: 3'- cCGGGCGCG-GCGACCG-----------GGCCGcagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 62287 | 0.69 | 0.345961 |
Target: 5'- cGGCCUGCuGCCGCUccGaGCCCGcGCG-Ca- -3' miRNA: 3'- -CCGGGCG-CGGCGA--C-CGGGC-CGCaGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 99248 | 0.69 | 0.350224 |
Target: 5'- cGGaCCC-CGCCGCggaggggcucgggGGCuCCGGCGcgCUCc -3' miRNA: 3'- -CC-GGGcGCGGCGa------------CCG-GGCCGCa-GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 88926 | 0.69 | 0.353087 |
Target: 5'- uGCCCGCGgUGCggcgaUGGCgCGGUGUaaCUCg -3' miRNA: 3'- cCGGGCGCgGCG-----ACCGgGCCGCA--GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 141295 | 0.69 | 0.353087 |
Target: 5'- aGCCacacguggCGCGCCgGCgacGGCaCCGGCGUCg- -3' miRNA: 3'- cCGG--------GCGCGG-CGa--CCG-GGCCGCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 76460 | 0.69 | 0.353087 |
Target: 5'- cGCCCGCcccuccaccGuCCGCcGGCCCGGCcgcagCUCc -3' miRNA: 3'- cCGGGCG---------C-GGCGaCCGGGCCGca---GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 136707 | 0.69 | 0.360316 |
Target: 5'- cGCCCgGUGCaggCGCcGGuCCCGGCGUC-Ca -3' miRNA: 3'- cCGGG-CGCG---GCGaCC-GGGCCGCAGaG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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