Results 41 - 60 of 179 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11022 | 3' | -66.8 | NC_002794.1 | + | 114817 | 0.66 | 0.480405 |
Target: 5'- aGGCCCGCG-CGCUc-UCCGGCGgccgagucggCUCg -3' miRNA: 3'- -CCGGGCGCgGCGAccGGGCCGCa---------GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 34980 | 0.66 | 0.479539 |
Target: 5'- uGGCCacgaaacUGCGCCgGCUgcgGGCCCGGCa---- -3' miRNA: 3'- -CCGG-------GCGCGG-CGA---CCGGGCCGcagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 14477 | 0.66 | 0.471778 |
Target: 5'- cGCgCCGCGCuCGCUguucgcggcggcGGCCC-GCG-CUCg -3' miRNA: 3'- cCG-GGCGCG-GCGA------------CCGGGcCGCaGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 92248 | 0.66 | 0.471778 |
Target: 5'- aGCCCucggcgGCGUCGCUGGCggCGGCGcCg- -3' miRNA: 3'- cCGGG------CGCGGCGACCGg-GCCGCaGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 64829 | 0.66 | 0.471778 |
Target: 5'- aGCCgGCGCCGaCgaccggacGGCgCGGCGgcacCUCg -3' miRNA: 3'- cCGGgCGCGGC-Ga-------CCGgGCCGCa---GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 119687 | 0.66 | 0.471778 |
Target: 5'- cGGCgucuCCG-GCUGCUGGgCCGGCGg--- -3' miRNA: 3'- -CCG----GGCgCGGCGACCgGGCCGCagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 115095 | 0.67 | 0.46323 |
Target: 5'- cGCCCGCaGCCGC-GcGUCCG-CGUCgUCa -3' miRNA: 3'- cCGGGCG-CGGCGaC-CGGGCcGCAG-AG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 190116 | 0.67 | 0.46323 |
Target: 5'- cGUCCGCGCCGaagcGGUCCGcGCGcCg- -3' miRNA: 3'- cCGGGCGCGGCga--CCGGGC-CGCaGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 184033 | 0.67 | 0.46323 |
Target: 5'- cGGCaCCGCGCgcagcgcgcgguCGCgGGCCgCGGCGa--- -3' miRNA: 3'- -CCG-GGCGCG------------GCGaCCGG-GCCGCagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 122214 | 0.67 | 0.46323 |
Target: 5'- uGCCgGCGCCGCUacgauaagcGGCgCCGGaCG-CUg -3' miRNA: 3'- cCGGgCGCGGCGA---------CCG-GGCC-GCaGAg -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 49254 | 0.67 | 0.46323 |
Target: 5'- cGCCCGCGCacccacgacgggCGCUccaacGGCCCgGGCGcCg- -3' miRNA: 3'- cCGGGCGCG------------GCGA-----CCGGG-CCGCaGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 108201 | 0.67 | 0.46323 |
Target: 5'- cGGCgCUGCGCCGCc-GCgCCGGC--CUCg -3' miRNA: 3'- -CCG-GGCGCGGCGacCG-GGCCGcaGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 49392 | 0.67 | 0.454763 |
Target: 5'- aGGCCgC-CGCCGUcGGCCaCGGCGg--- -3' miRNA: 3'- -CCGG-GcGCGGCGaCCGG-GCCGCagag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 22957 | 0.67 | 0.454763 |
Target: 5'- gGGCCgGCGCCGUUGuCCCcuuucCGUUUCu -3' miRNA: 3'- -CCGGgCGCGGCGACcGGGcc---GCAGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 128667 | 0.67 | 0.454763 |
Target: 5'- cGGCCgCGCgaauaaucGCCGCggcGGUCCGGaggCUCg -3' miRNA: 3'- -CCGG-GCG--------CGGCGa--CCGGGCCgcaGAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 90732 | 0.67 | 0.454763 |
Target: 5'- cGGCCC-UGUCGCUGuGCgaCCGGuCGUCg- -3' miRNA: 3'- -CCGGGcGCGGCGAC-CG--GGCC-GCAGag -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 84759 | 0.67 | 0.454763 |
Target: 5'- cGGCCgCGagaggGCCGUccgaGGCCCGGCccggCUCu -3' miRNA: 3'- -CCGG-GCg----CGGCGa---CCGGGCCGca--GAG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 190610 | 0.67 | 0.449724 |
Target: 5'- aGGUCCGCgacaGCCGCaGguucgacucgccguaGCCCGGCGUgUg -3' miRNA: 3'- -CCGGGCG----CGGCGaC---------------CGGGCCGCAgAg -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 90469 | 0.67 | 0.446381 |
Target: 5'- aGGCCgCGCGCgGCgGGgCCGcCGUCcCg -3' miRNA: 3'- -CCGG-GCGCGgCGaCCgGGCcGCAGaG- -5' |
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11022 | 3' | -66.8 | NC_002794.1 | + | 123248 | 0.67 | 0.446381 |
Target: 5'- aGCCUGUGCCacuuucgccgGCUGGUCCGGgccgcgguCGUCg- -3' miRNA: 3'- cCGGGCGCGG----------CGACCGGGCC--------GCAGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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