miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 769 0.66 0.497885
Target:  5'- gGGCCCGCGgUGCauuUGGCaCGGUGcCa- -3'
miRNA:   3'- -CCGGGCGCgGCG---ACCGgGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 8144 0.68 0.408975
Target:  5'- cGGCgaCgGCaCCGCUucuccuucucccccgGGCCCGGCGUCcCg -3'
miRNA:   3'- -CCG--GgCGcGGCGA---------------CCGGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 9540 0.66 0.512964
Target:  5'- aGCCCGUGCCcgaucucgagauagGCUGGUCUGGuCGacaCUUa -3'
miRNA:   3'- cCGGGCGCGG--------------CGACCGGGCC-GCa--GAG- -5'
11022 3' -66.8 NC_002794.1 + 12010 0.71 0.262796
Target:  5'- uGGaCUgaugUGCGCCGCcGGCCCGgGCGUC-Cg -3'
miRNA:   3'- -CC-GG----GCGCGGCGaCCGGGC-CGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 12166 0.69 0.32792
Target:  5'- cGCCCGgaucgucgccgccgaCGCCGCcgcGGCCgGGCGccgCUCg -3'
miRNA:   3'- cCGGGC---------------GCGGCGa--CCGGgCCGCa--GAG- -5'
11022 3' -66.8 NC_002794.1 + 12420 0.7 0.305392
Target:  5'- cGGCgCGCGCCGaCUGGCagcuguCCcGCGUCa- -3'
miRNA:   3'- -CCGgGCGCGGC-GACCG------GGcCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 12592 0.66 0.497885
Target:  5'- cGCCUGCGUccccaCGCUGcGCCaccaGcGCGUCUg -3'
miRNA:   3'- cCGGGCGCG-----GCGAC-CGGg---C-CGCAGAg -5'
11022 3' -66.8 NC_002794.1 + 14477 0.66 0.471778
Target:  5'- cGCgCCGCGCuCGCUguucgcggcggcGGCCC-GCG-CUCg -3'
miRNA:   3'- cCG-GGCGCG-GCGA------------CCGGGcCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 14516 0.77 0.101732
Target:  5'- cGGCgCUcgugGCGCCGCUcGGCCaCGGCGcUCUCg -3'
miRNA:   3'- -CCG-GG----CGCGGCGA-CCGG-GCCGC-AGAG- -5'
11022 3' -66.8 NC_002794.1 + 14652 0.66 0.52462
Target:  5'- cGCCgGCGCCGC-GGCgUCGGUccGaCUCg -3'
miRNA:   3'- cCGGgCGCGGCGaCCG-GGCCG--CaGAG- -5'
11022 3' -66.8 NC_002794.1 + 16504 0.66 0.52462
Target:  5'- --aCCGcCGCCGCcgucCCCGGCGUCg- -3'
miRNA:   3'- ccgGGC-GCGGCGacc-GGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 17669 0.66 0.515644
Target:  5'- cGCCaC-CGCCGCcGGCCCcGGCGg--- -3'
miRNA:   3'- cCGG-GcGCGGCGaCCGGG-CCGCagag -5'
11022 3' -66.8 NC_002794.1 + 17966 0.69 0.360316
Target:  5'- cGCCCGgGCCGUgaGCCUGGCGcC-Ca -3'
miRNA:   3'- cCGGGCgCGGCGacCGGGCCGCaGaG- -5'
11022 3' -66.8 NC_002794.1 + 19529 0.68 0.367648
Target:  5'- cGCCgGCGCgGCgcGGCCCgccGGUGUCg- -3'
miRNA:   3'- cCGGgCGCGgCGa-CCGGG---CCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 21870 0.68 0.405816
Target:  5'- cGGUCCGCGagGCcGGCCgCGGgGUgUCc -3'
miRNA:   3'- -CCGGGCGCggCGaCCGG-GCCgCAgAG- -5'
11022 3' -66.8 NC_002794.1 + 21900 0.67 0.42988
Target:  5'- cGGCCUGCGUCGgUGGUggCGGCGg--- -3'
miRNA:   3'- -CCGGGCGCGGCgACCGg-GCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 22957 0.67 0.454763
Target:  5'- gGGCCgGCGCCGUUGuCCCcuuucCGUUUCu -3'
miRNA:   3'- -CCGGgCGCGGCGACcGGGcc---GCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 29761 0.66 0.497885
Target:  5'- aGCCCGCGCCGagcGUCuCGGcCG-CUCg -3'
miRNA:   3'- cCGGGCGCGGCgacCGG-GCC-GCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 34056 0.66 0.510289
Target:  5'- cGGCCCGCGCacgacccgccguuccCGCcggcGGCCgGGCagccGUCg- -3'
miRNA:   3'- -CCGGGCGCG---------------GCGa---CCGGgCCG----CAGag -5'
11022 3' -66.8 NC_002794.1 + 34980 0.66 0.479539
Target:  5'- uGGCCacgaaacUGCGCCgGCUgcgGGCCCGGCa---- -3'
miRNA:   3'- -CCGG-------GCGCGG-CGA---CCGGGCCGcagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.