miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 35556 0.71 0.240696
Target:  5'- cGCUCGCGCgCGCgcguggUGGCCCaGGCGuUCUUc -3'
miRNA:   3'- cCGGGCGCG-GCG------ACCGGG-CCGC-AGAG- -5'
11022 3' -66.8 NC_002794.1 + 37943 0.69 0.325207
Target:  5'- cGCCCGUGCCucgGCgacucGCUCGGCGgCUCg -3'
miRNA:   3'- cCGGGCGCGG---CGac---CGGGCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 40569 0.66 0.506732
Target:  5'- cGUUCGCGCCGUccUGGCCgCGGgcccUCUCc -3'
miRNA:   3'- cCGGGCGCGGCG--ACCGG-GCCgc--AGAG- -5'
11022 3' -66.8 NC_002794.1 + 43797 0.68 0.367648
Target:  5'- cGUCCGaccCGCCGCUccgGGCCCaGGC-UCUCc -3'
miRNA:   3'- cCGGGC---GCGGCGA---CCGGG-CCGcAGAG- -5'
11022 3' -66.8 NC_002794.1 + 44218 0.66 0.506732
Target:  5'- cGGCUCggGCGCCGagGGCUCGGUGccgggcggCUCg -3'
miRNA:   3'- -CCGGG--CGCGGCgaCCGGGCCGCa-------GAG- -5'
11022 3' -66.8 NC_002794.1 + 44287 0.69 0.345961
Target:  5'- aGUCCGCGcCCGCcGGgCCGGCGa--- -3'
miRNA:   3'- cCGGGCGC-GGCGaCCgGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 44418 0.66 0.52462
Target:  5'- cGGCCgGCGCCGagcGGCucgacgacaCCGGCG-Cg- -3'
miRNA:   3'- -CCGGgCGCGGCga-CCG---------GGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 44522 0.66 0.506732
Target:  5'- gGGCCCGUGuCCGCgagcGCgCCGuCGUCgUCg -3'
miRNA:   3'- -CCGGGCGC-GGCGac--CG-GGCcGCAG-AG- -5'
11022 3' -66.8 NC_002794.1 + 44730 0.75 0.129262
Target:  5'- cGGCCgGCGCCGCcggagGGCUaagaCGGCGaCUCg -3'
miRNA:   3'- -CCGGgCGCGGCGa----CCGG----GCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 45930 0.68 0.375082
Target:  5'- aGGCUCGCGCUuCcccGCCCGGUgaccGUCUCu -3'
miRNA:   3'- -CCGGGCGCGGcGac-CGGGCCG----CAGAG- -5'
11022 3' -66.8 NC_002794.1 + 46194 0.66 0.52372
Target:  5'- cGGCaCCGCGCuCGCUcGCcgccguuCCGGCcagCUCg -3'
miRNA:   3'- -CCG-GGCGCG-GCGAcCG-------GGCCGca-GAG- -5'
11022 3' -66.8 NC_002794.1 + 47418 0.67 0.42988
Target:  5'- cGGCgCCGuCGCgCGgaGcGCCaGGCGUUUCa -3'
miRNA:   3'- -CCG-GGC-GCG-GCgaC-CGGgCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 48073 0.66 0.512964
Target:  5'- uGGCCgGCcagcgggagcagccGCCGCUcG-CCGGCGUCa- -3'
miRNA:   3'- -CCGGgCG--------------CGGCGAcCgGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 49011 0.8 0.056551
Target:  5'- -uCCCGCGCCGCggcGGCCgCGGCGUCg- -3'
miRNA:   3'- ccGGGCGCGGCGa--CCGG-GCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 49254 0.67 0.46323
Target:  5'- cGCCCGCGCacccacgacgggCGCUccaacGGCCCgGGCGcCg- -3'
miRNA:   3'- cCGGGCGCG------------GCGA-----CCGGG-CCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 49392 0.67 0.454763
Target:  5'- aGGCCgC-CGCCGUcGGCCaCGGCGg--- -3'
miRNA:   3'- -CCGG-GcGCGGCGaCCGG-GCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 50790 0.69 0.345961
Target:  5'- cGGgCgGCGCCucCUcGCCCGGCGUCg- -3'
miRNA:   3'- -CCgGgCGCGGc-GAcCGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 52758 0.69 0.32792
Target:  5'- aGuaCCGCGCCGC-GGCCCGGgccgcgggaucgugaCG-CUCg -3'
miRNA:   3'- -CcgGGCGCGGCGaCCGGGCC---------------GCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 53313 0.68 0.397207
Target:  5'- cGGCCgGCGCCGCgagaucGGCucgaaccgcaccuCCGGCGcC-Ca -3'
miRNA:   3'- -CCGGgCGCGGCGa-----CCG-------------GGCCGCaGaG- -5'
11022 3' -66.8 NC_002794.1 + 53781 0.73 0.196628
Target:  5'- cGCCCGCGaCGC--GCCCGGCGgguuUCUCg -3'
miRNA:   3'- cCGGGCGCgGCGacCGGGCCGC----AGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.