miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 55510 0.66 0.515644
Target:  5'- cGGuCCUGCGCCacGCcaGCCCGGCGg--- -3'
miRNA:   3'- -CC-GGGCGCGG--CGacCGGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 55620 0.69 0.345961
Target:  5'- aGCCCGUGCaCGCUGGCcagcacgcgggCCGGCa---- -3'
miRNA:   3'- cCGGGCGCG-GCGACCG-----------GGCCGcagag -5'
11022 3' -66.8 NC_002794.1 + 56580 0.73 0.196628
Target:  5'- cGCCCGCGCCGC-GGCgcccgccgCCGGCcucCUCa -3'
miRNA:   3'- cCGGGCGCGGCGaCCG--------GGCCGca-GAG- -5'
11022 3' -66.8 NC_002794.1 + 57401 0.67 0.446381
Target:  5'- cGGCuCCgGCGcCCGCgUGGCC-GGCGUgCUg -3'
miRNA:   3'- -CCG-GG-CGC-GGCG-ACCGGgCCGCA-GAg -5'
11022 3' -66.8 NC_002794.1 + 58063 0.68 0.375082
Target:  5'- cGGCCCcgGCgGCgGCgggacgggcGGCCCGGCGcccgcgCUCg -3'
miRNA:   3'- -CCGGG--CG-CGgCGa--------CCGGGCCGCa-----GAG- -5'
11022 3' -66.8 NC_002794.1 + 58338 0.68 0.390251
Target:  5'- uGCUCGUcgggaaccuGCCGCUcGGCCUGGCGcCg- -3'
miRNA:   3'- cCGGGCG---------CGGCGA-CCGGGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 60082 0.66 0.489108
Target:  5'- cGCCCGCGCagguGCUccacGGCCagcuGGcCGUCUg -3'
miRNA:   3'- cCGGGCGCGg---CGA----CCGGg---CC-GCAGAg -5'
11022 3' -66.8 NC_002794.1 + 60174 0.69 0.318497
Target:  5'- aGCCCGCGCgggCGCUcGGCCUGccucuucaGCGUCg- -3'
miRNA:   3'- cCGGGCGCG---GCGA-CCGGGC--------CGCAGag -5'
11022 3' -66.8 NC_002794.1 + 61289 0.66 0.480405
Target:  5'- aGGUCCGCGCCGCcaccGCCCaGC-UC-Cg -3'
miRNA:   3'- -CCGGGCGCGGCGac--CGGGcCGcAGaG- -5'
11022 3' -66.8 NC_002794.1 + 61809 0.67 0.413743
Target:  5'- -cCCCGCucaucuccggcgGCCGCcGGCggCCGGCGUCa- -3'
miRNA:   3'- ccGGGCG------------CGGCGaCCG--GGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 62287 0.69 0.345961
Target:  5'- cGGCCUGCuGCCGCUccGaGCCCGcGCG-Ca- -3'
miRNA:   3'- -CCGGGCG-CGGCGA--C-CGGGC-CGCaGag -5'
11022 3' -66.8 NC_002794.1 + 62745 0.7 0.280433
Target:  5'- cGCCCGCgGCCGuCUcgcuccGGCuCCGGCuGUUUCg -3'
miRNA:   3'- cCGGGCG-CGGC-GA------CCG-GGCCG-CAGAG- -5'
11022 3' -66.8 NC_002794.1 + 63372 0.72 0.225156
Target:  5'- cGCCCGCGCCGCUGcCCCGcCGccccgcugCUCc -3'
miRNA:   3'- cCGGGCGCGGCGACcGGGCcGCa-------GAG- -5'
11022 3' -66.8 NC_002794.1 + 63912 0.77 0.106755
Target:  5'- cGCUCGCGCCGCgaccgccGCCCGGCcggcgaGUCUCg -3'
miRNA:   3'- cCGGGCGCGGCGac-----CGGGCCG------CAGAG- -5'
11022 3' -66.8 NC_002794.1 + 64829 0.66 0.471778
Target:  5'- aGCCgGCGCCGaCgaccggacGGCgCGGCGgcacCUCg -3'
miRNA:   3'- cCGGgCGCGGC-Ga-------CCGgGCCGCa---GAG- -5'
11022 3' -66.8 NC_002794.1 + 65753 0.66 0.508509
Target:  5'- cGGcCCCGCGCCGCcgccgcccgugguggGGCCgagcggaucacacgaGGCGUUg- -3'
miRNA:   3'- -CC-GGGCGCGGCGa--------------CCGGg--------------CCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 66853 0.66 0.506732
Target:  5'- cGUCgGCGCgGCgaGGCCgCGGCGUg-- -3'
miRNA:   3'- cCGGgCGCGgCGa-CCGG-GCCGCAgag -5'
11022 3' -66.8 NC_002794.1 + 67032 0.74 0.159771
Target:  5'- cGGCUCcCGCCGCgucgcGGaCCCGGCGUC-Cg -3'
miRNA:   3'- -CCGGGcGCGGCGa----CC-GGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 67836 0.69 0.318497
Target:  5'- cGGCCCGcCGUCGCccGGCgCCGccgcGCGUCa- -3'
miRNA:   3'- -CCGGGC-GCGGCGa-CCG-GGC----CGCAGag -5'
11022 3' -66.8 NC_002794.1 + 68765 0.67 0.42988
Target:  5'- gGGCCgccgggGCGCCGgacGCCCGGC-UCUCg -3'
miRNA:   3'- -CCGGg-----CGCGGCgacCGGGCCGcAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.