miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 68899 0.7 0.311893
Target:  5'- cGGCUaccgauCGCGUCGCggGGCUcgCGGCGUcCUCg -3'
miRNA:   3'- -CCGG------GCGCGGCGa-CCGG--GCCGCA-GAG- -5'
11022 3' -66.8 NC_002794.1 + 68938 0.78 0.087968
Target:  5'- cGCCCGCggGCCGC-GGCgCCGGCGcCUCu -3'
miRNA:   3'- cCGGGCG--CGGCGaCCG-GGCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 69811 0.72 0.235419
Target:  5'- aGCCCGcCGCCGCga--CCGGCGUC-Cg -3'
miRNA:   3'- cCGGGC-GCGGCGaccgGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 70327 0.7 0.280433
Target:  5'- cGCCCGCGaagaCGCcgacGGCCgGGCGcccgCUCg -3'
miRNA:   3'- cCGGGCGCg---GCGa---CCGGgCCGCa---GAG- -5'
11022 3' -66.8 NC_002794.1 + 71221 0.66 0.480405
Target:  5'- aGGuCCCG-GCCGCguagUGGCggCCGGCGUg-- -3'
miRNA:   3'- -CC-GGGCgCGGCG----ACCG--GGCCGCAgag -5'
11022 3' -66.8 NC_002794.1 + 71772 0.72 0.220169
Target:  5'- cGGUCCGCGCCGUc-GCgCGGCGagUCg -3'
miRNA:   3'- -CCGGGCGCGGCGacCGgGCCGCagAG- -5'
11022 3' -66.8 NC_002794.1 + 72916 0.67 0.413743
Target:  5'- cGCUCGcCGCCGCcgucGGagCCGGCGUC-Cg -3'
miRNA:   3'- cCGGGC-GCGGCGa---CCg-GGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 76311 0.66 0.52372
Target:  5'- gGGCCCGCGCCGgcaaccagucgucCUcccuCCCGGCGg--- -3'
miRNA:   3'- -CCGGGCGCGGC-------------GAcc--GGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 76460 0.69 0.353087
Target:  5'- cGCCCGCcccuccaccGuCCGCcGGCCCGGCcgcagCUCc -3'
miRNA:   3'- cCGGGCG---------C-GGCGaCCGGGCCGca---GAG- -5'
11022 3' -66.8 NC_002794.1 + 78405 0.67 0.418545
Target:  5'- aGGCCU-CGCCGCgacucuccgcuCCCGGCGUCa- -3'
miRNA:   3'- -CCGGGcGCGGCGacc--------GGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 79042 0.66 0.52462
Target:  5'- cGGCCCG-GCCGCU--CCC-GCG-CUCg -3'
miRNA:   3'- -CCGGGCgCGGCGAccGGGcCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 80464 0.7 0.301542
Target:  5'- cGGCCCGCuGCCcgucuuccgcgucgaGCUGGCgcaccaCCGGCacGUCUUc -3'
miRNA:   3'- -CCGGGCG-CGG---------------CGACCG------GGCCG--CAGAG- -5'
11022 3' -66.8 NC_002794.1 + 80523 0.74 0.152474
Target:  5'- cGGCgCGCGaCGcCUGGCaCCGGCGcCUCu -3'
miRNA:   3'- -CCGgGCGCgGC-GACCG-GGCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 80793 0.71 0.251546
Target:  5'- -aCCUGCGCCGCgUGcuccuccacGCCCGGCGUgagCUCu -3'
miRNA:   3'- ccGGGCGCGGCG-AC---------CGGGCCGCA---GAG- -5'
11022 3' -66.8 NC_002794.1 + 81410 0.67 0.413743
Target:  5'- cGGCUCGggaGCUGCUcGCCCGGCuUCg- -3'
miRNA:   3'- -CCGGGCg--CGGCGAcCGGGCCGcAGag -5'
11022 3' -66.8 NC_002794.1 + 84172 0.76 0.117507
Target:  5'- cGGCCCaGCGCUc--GGCCCGGCG-CUCg -3'
miRNA:   3'- -CCGGG-CGCGGcgaCCGGGCCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 84759 0.67 0.454763
Target:  5'- cGGCCgCGagaggGCCGUccgaGGCCCGGCccggCUCu -3'
miRNA:   3'- -CCGG-GCg----CGGCGa---CCGGGCCGca--GAG- -5'
11022 3' -66.8 NC_002794.1 + 85048 0.71 0.268573
Target:  5'- gGGCCCGCGCuCGaCgaccGGCCaCGccGCGUCUg -3'
miRNA:   3'- -CCGGGCGCG-GC-Ga---CCGG-GC--CGCAGAg -5'
11022 3' -66.8 NC_002794.1 + 85466 0.67 0.421765
Target:  5'- uGGCCgGCGCCcgGCcuccGGCCUGuCGUCUg -3'
miRNA:   3'- -CCGGgCGCGG--CGa---CCGGGCcGCAGAg -5'
11022 3' -66.8 NC_002794.1 + 88926 0.69 0.353087
Target:  5'- uGCCCGCGgUGCggcgaUGGCgCGGUGUaaCUCg -3'
miRNA:   3'- cCGGGCGCgGCG-----ACCGgGCCGCA--GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.