miRNA display CGI


Results 81 - 100 of 179 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 89913 0.7 0.280433
Target:  5'- cGGCCCGUuggcgcuagaGgCGCgGGCgCCGGCuUCUCg -3'
miRNA:   3'- -CCGGGCG----------CgGCGaCCG-GGCCGcAGAG- -5'
11022 3' -66.8 NC_002794.1 + 90100 0.66 0.52462
Target:  5'- cGCuCUGCGCCGCggugGGCgCCGuGaGUCUg -3'
miRNA:   3'- cCG-GGCGCGGCGa---CCG-GGC-CgCAGAg -5'
11022 3' -66.8 NC_002794.1 + 90469 0.67 0.446381
Target:  5'- aGGCCgCGCGCgGCgGGgCCGcCGUCcCg -3'
miRNA:   3'- -CCGG-GCGCGgCGaCCgGGCcGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 90660 0.67 0.421765
Target:  5'- cGCUCGCGCCGUUgGGgCCGGCc---- -3'
miRNA:   3'- cCGGGCGCGGCGA-CCgGGCCGcagag -5'
11022 3' -66.8 NC_002794.1 + 90732 0.67 0.454763
Target:  5'- cGGCCC-UGUCGCUGuGCgaCCGGuCGUCg- -3'
miRNA:   3'- -CCGGGcGCGGCGAC-CG--GGCC-GCAGag -5'
11022 3' -66.8 NC_002794.1 + 90962 0.67 0.42988
Target:  5'- aGGCCCGgGcCCGCUucGGCgUGGC--CUCg -3'
miRNA:   3'- -CCGGGCgC-GGCGA--CCGgGCCGcaGAG- -5'
11022 3' -66.8 NC_002794.1 + 92038 0.66 0.506732
Target:  5'- uGCaCUGCGCCGUgaaccUGuGUCCGGCGUg-- -3'
miRNA:   3'- cCG-GGCGCGGCG-----AC-CGGGCCGCAgag -5'
11022 3' -66.8 NC_002794.1 + 92248 0.66 0.471778
Target:  5'- aGCCCucggcgGCGUCGCUGGCggCGGCGcCg- -3'
miRNA:   3'- cCGGG------CGCGGCGACCGg-GCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 92330 0.73 0.175315
Target:  5'- gGGCCCGgGCgGgC-GGCUCGGCGUCa- -3'
miRNA:   3'- -CCGGGCgCGgC-GaCCGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 94002 0.67 0.42988
Target:  5'- cGCCgGCGCCgGCggcGGgCCGGCGggUUCc -3'
miRNA:   3'- cCGGgCGCGG-CGa--CCgGGCCGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 97702 0.66 0.497885
Target:  5'- cGCCCGU-CCGCguUGuGCCCaaaauGGCGUUUCu -3'
miRNA:   3'- cCGGGCGcGGCG--AC-CGGG-----CCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 98251 0.76 0.126225
Target:  5'- cGGCCacauCGCCGa-GGCCUGGUGUCUCg -3'
miRNA:   3'- -CCGGgc--GCGGCgaCCGGGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 99248 0.69 0.350224
Target:  5'- cGGaCCC-CGCCGCggaggggcucgggGGCuCCGGCGcgCUCc -3'
miRNA:   3'- -CC-GGGcGCGGCGa------------CCG-GGCCGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 99412 0.66 0.515644
Target:  5'- cGCCCGcCGUCGCagcagGGUCCGG-GUUUg -3'
miRNA:   3'- cCGGGC-GCGGCGa----CCGGGCCgCAGAg -5'
11022 3' -66.8 NC_002794.1 + 99611 0.7 0.292705
Target:  5'- cGCUCGCGCCGCcucGGCCC--CGUUUCu -3'
miRNA:   3'- cCGGGCGCGGCGa--CCGGGccGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 99801 0.75 0.138781
Target:  5'- aGCgCGCGCCGCgGGCgCCGGCGcCgUCg -3'
miRNA:   3'- cCGgGCGCGGCGaCCG-GGCCGCaG-AG- -5'
11022 3' -66.8 NC_002794.1 + 100307 0.72 0.220169
Target:  5'- cGCCUcCGCCGCUGGCacgcgcggCCGGCGcacggccggcUCUCg -3'
miRNA:   3'- cCGGGcGCGGCGACCG--------GGCCGC----------AGAG- -5'
11022 3' -66.8 NC_002794.1 + 104421 0.7 0.286517
Target:  5'- cGGCCuCG-GCCGCcGGCCCGGaCGcCg- -3'
miRNA:   3'- -CCGG-GCgCGGCGaCCGGGCC-GCaGag -5'
11022 3' -66.8 NC_002794.1 + 104903 0.72 0.23024
Target:  5'- aGGCgCCGUGCUGCUcgagcaGGCgCCG-CGUCUCu -3'
miRNA:   3'- -CCG-GGCGCGGCGA------CCG-GGCcGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 107190 0.69 0.325207
Target:  5'- cGGCgCCGcCGCCGCcggccucGCCCGGCGcCg- -3'
miRNA:   3'- -CCG-GGC-GCGGCGac-----CGGGCCGCaGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.