miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 194818 0.79 0.072352
Target:  5'- aGCCgcagcgacgCGCGCuCGC-GGCCCGGCGUCUCc -3'
miRNA:   3'- cCGG---------GCGCG-GCGaCCGGGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 194516 0.71 0.246072
Target:  5'- cGGCCCGCguGCCGCcGGCCCaGCa---- -3'
miRNA:   3'- -CCGGGCG--CGGCGaCCGGGcCGcagag -5'
11022 3' -66.8 NC_002794.1 + 193809 0.66 0.506732
Target:  5'- cGCCCGC-UCGuCUGGCgCCGacGCGUCg- -3'
miRNA:   3'- cCGGGCGcGGC-GACCG-GGC--CGCAGag -5'
11022 3' -66.8 NC_002794.1 + 193741 0.66 0.512964
Target:  5'- cGCCCGCGgcuucggcgagcgaCCGCcGGCCCcGCucgCUCg -3'
miRNA:   3'- cCGGGCGC--------------GGCGaCCGGGcCGca-GAG- -5'
11022 3' -66.8 NC_002794.1 + 193176 0.69 0.325207
Target:  5'- aGCCCGCGCCGC--GCCa-GCGUgUCc -3'
miRNA:   3'- cCGGGCGCGGCGacCGGgcCGCAgAG- -5'
11022 3' -66.8 NC_002794.1 + 191532 0.7 0.311238
Target:  5'- cGGCCCGCgccucccGCCGCagucgGGUCCGG-GUC-Ca -3'
miRNA:   3'- -CCGGGCG-------CGGCGa----CCGGGCCgCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 190931 0.66 0.52462
Target:  5'- cGGCCCGCaGCCGgUagcacGGCCCcagcagcaccaGCGcCUCg -3'
miRNA:   3'- -CCGGGCG-CGGCgA-----CCGGGc----------CGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 190669 0.66 0.501416
Target:  5'- cGCCCGCcgcGCCGCcgGGucuccacgcacaccuCCCGGCGcagcgucggguUCUCc -3'
miRNA:   3'- cCGGGCG---CGGCGa-CC---------------GGGCCGC-----------AGAG- -5'
11022 3' -66.8 NC_002794.1 + 190610 0.67 0.449724
Target:  5'- aGGUCCGCgacaGCCGCaGguucgacucgccguaGCCCGGCGUgUg -3'
miRNA:   3'- -CCGGGCG----CGGCGaC---------------CGGGCCGCAgAg -5'
11022 3' -66.8 NC_002794.1 + 190116 0.67 0.46323
Target:  5'- cGUCCGCGCCGaagcGGUCCGcGCGcCg- -3'
miRNA:   3'- cCGGGCGCGGCga--CCGGGC-CGCaGag -5'
11022 3' -66.8 NC_002794.1 + 189458 0.69 0.318497
Target:  5'- cGGCCagcaCGCGCCGaaaGGCCgCGgGCGUCg- -3'
miRNA:   3'- -CCGG----GCGCGGCga-CCGG-GC-CGCAGag -5'
11022 3' -66.8 NC_002794.1 + 189052 0.69 0.360316
Target:  5'- gGGCUgCGCGUCGCgua--CGGCGUCUCg -3'
miRNA:   3'- -CCGG-GCGCGGCGaccggGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 188295 0.69 0.360316
Target:  5'- cGCCgCGCGCCGgacccGGCCCGuCGUCgUCg -3'
miRNA:   3'- cCGG-GCGCGGCga---CCGGGCcGCAG-AG- -5'
11022 3' -66.8 NC_002794.1 + 187741 0.67 0.411355
Target:  5'- cGGCaCCGUcgccaucuccgaacGCCGCcGGCgCCGGuCGcCUCg -3'
miRNA:   3'- -CCG-GGCG--------------CGGCGaCCG-GGCC-GCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 187591 0.72 0.215276
Target:  5'- cGGCCgC-CGUCGCgacGCCCGGCGUCg- -3'
miRNA:   3'- -CCGG-GcGCGGCGac-CGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 187438 0.73 0.187844
Target:  5'- aGGCcagCCGCGCCGuCUGccgccGCUCGGCGUCg- -3'
miRNA:   3'- -CCG---GGCGCGGC-GAC-----CGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 186949 0.68 0.382616
Target:  5'- cGGCCCccGgGCCGCUGGCC-GcCGcCUCc -3'
miRNA:   3'- -CCGGG--CgCGGCGACCGGgCcGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 186879 0.7 0.274451
Target:  5'- gGGCUCG-GCuCGC-GGUCCGGCGUC-Cg -3'
miRNA:   3'- -CCGGGCgCG-GCGaCCGGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 186006 0.66 0.52462
Target:  5'- gGGCUC-CGCCGCUccgGGCCCGGg----- -3'
miRNA:   3'- -CCGGGcGCGGCGA---CCGGGCCgcagag -5'
11022 3' -66.8 NC_002794.1 + 184959 0.66 0.52462
Target:  5'- cGGCCCGCgcaGCCGCUcGUCgGGCa---- -3'
miRNA:   3'- -CCGGGCG---CGGCGAcCGGgCCGcagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.