miRNA display CGI


Results 21 - 40 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 184501 0.66 0.52462
Target:  5'- cGCCCGgGCgGCgcgGGCCCcGCG-Cg- -3'
miRNA:   3'- cCGGGCgCGgCGa--CCGGGcCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 184033 0.67 0.46323
Target:  5'- cGGCaCCGCGCgcagcgcgcgguCGCgGGCCgCGGCGa--- -3'
miRNA:   3'- -CCG-GGCGCG------------GCGaCCGG-GCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 183280 0.76 0.123254
Target:  5'- aGCCCaccGCGCgGaucgGGCCCGGCGUCUg -3'
miRNA:   3'- cCGGG---CGCGgCga--CCGGGCCGCAGAg -5'
11022 3' -66.8 NC_002794.1 + 181759 0.7 0.285904
Target:  5'- aGCCCGCugacGCCGaUGGCgCCGcgccgccGCGUCUCg -3'
miRNA:   3'- cCGGGCG----CGGCgACCG-GGC-------CGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 181533 0.74 0.167381
Target:  5'- cGCCCGcCGCCgGC-GGgCCGGCGcUCUCg -3'
miRNA:   3'- cCGGGC-GCGG-CGaCCgGGCCGC-AGAG- -5'
11022 3' -66.8 NC_002794.1 + 181364 0.67 0.446381
Target:  5'- cGGCCCG-GuuGagggucacgGGCCCGGcCGUCa- -3'
miRNA:   3'- -CCGGGCgCggCga-------CCGGGCC-GCAGag -5'
11022 3' -66.8 NC_002794.1 + 180287 0.71 0.251546
Target:  5'- cGGCCCGCGCCGCcgcaacacgccGGC-CGGCG-Cg- -3'
miRNA:   3'- -CCGGGCGCGGCGa----------CCGgGCCGCaGag -5'
11022 3' -66.8 NC_002794.1 + 176220 0.67 0.42988
Target:  5'- aGGCUCGC-UCGuCUcGCCCGGUGUCg- -3'
miRNA:   3'- -CCGGGCGcGGC-GAcCGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 156402 0.72 0.210476
Target:  5'- cGGCCgGCGCCGC-GGCCgCGGCc---- -3'
miRNA:   3'- -CCGGgCGCGGCGaCCGG-GCCGcagag -5'
11022 3' -66.8 NC_002794.1 + 154394 0.66 0.497885
Target:  5'- cGCCCGUucgcgugguGCCGgUGGCCa-GCG-CUCg -3'
miRNA:   3'- cCGGGCG---------CGGCgACCGGgcCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 153926 0.68 0.38795
Target:  5'- aGGUCCGCGaucgccgcggacacUCGCuggcucuacccUGGCCCGGCGaCUa -3'
miRNA:   3'- -CCGGGCGC--------------GGCG-----------ACCGGGCCGCaGAg -5'
11022 3' -66.8 NC_002794.1 + 151775 0.68 0.397985
Target:  5'- uGGagaCCGCGCCGCUGcacgccagacGCCgGGUGguguacgagCUCa -3'
miRNA:   3'- -CCg--GGCGCGGCGAC----------CGGgCCGCa--------GAG- -5'
11022 3' -66.8 NC_002794.1 + 151587 0.72 0.220169
Target:  5'- cGGCgCGCGCCGCcgccgcgGGCCC-GCGguucCUCg -3'
miRNA:   3'- -CCGgGCGCGGCGa------CCGGGcCGCa---GAG- -5'
11022 3' -66.8 NC_002794.1 + 150541 0.67 0.413743
Target:  5'- gGGCCgGCGCCa-UGGCCgucuCGGCGcuggagCUCa -3'
miRNA:   3'- -CCGGgCGCGGcgACCGG----GCCGCa-----GAG- -5'
11022 3' -66.8 NC_002794.1 + 150422 0.71 0.257121
Target:  5'- uGGCCCGCGagGCUGGaCCUGGaGUC-Cg -3'
miRNA:   3'- -CCGGGCGCggCGACC-GGGCCgCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 149154 0.72 0.225156
Target:  5'- uGCuUCGCGCCcguGCUGGCCuCGGgGUUUCu -3'
miRNA:   3'- cCG-GGCGCGG---CGACCGG-GCCgCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 146985 0.7 0.311893
Target:  5'- aGGUCgGCGCCGCcGGCCgacgucggcggCGGCGgccgccggcgCUCg -3'
miRNA:   3'- -CCGGgCGCGGCGaCCGG-----------GCCGCa---------GAG- -5'
11022 3' -66.8 NC_002794.1 + 145516 0.68 0.375082
Target:  5'- gGGUgCGCGagGCcGGCCCGaGCGcCUCg -3'
miRNA:   3'- -CCGgGCGCggCGaCCGGGC-CGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 144899 0.69 0.318497
Target:  5'- cGCUCGCGCCGCUGGgcCCCGcCGcCg- -3'
miRNA:   3'- cCGGGCGCGGCGACC--GGGCcGCaGag -5'
11022 3' -66.8 NC_002794.1 + 143274 0.69 0.338939
Target:  5'- cGGCCCgGCGCCGgccGCUCGGgGUCg- -3'
miRNA:   3'- -CCGGG-CGCGGCgacCGGGCCgCAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.