miRNA display CGI


Results 41 - 60 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 141644 0.67 0.421765
Target:  5'- aGGCCgGCgugGCCGC-GGCCgcCGGCGggUCg -3'
miRNA:   3'- -CCGGgCG---CGGCGaCCGG--GCCGCagAG- -5'
11022 3' -66.8 NC_002794.1 + 141593 0.77 0.099304
Target:  5'- cGCCCGCGUCGCcgggcGGCUCGGCGaccggCUCg -3'
miRNA:   3'- cCGGGCGCGGCGa----CCGGGCCGCa----GAG- -5'
11022 3' -66.8 NC_002794.1 + 141295 0.69 0.353087
Target:  5'- aGCCacacguggCGCGCCgGCgacGGCaCCGGCGUCg- -3'
miRNA:   3'- cCGG--------GCGCGG-CGa--CCG-GGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 140310 0.73 0.183161
Target:  5'- aGGCCUGCcgGCgGCUGGagaagucCuuGGCGUCUCu -3'
miRNA:   3'- -CCGGGCG--CGgCGACC-------GggCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 137656 0.7 0.274451
Target:  5'- gGGCCUccgGCGCCGCUGGUgCGGaCG-Ca- -3'
miRNA:   3'- -CCGGG---CGCGGCGACCGgGCC-GCaGag -5'
11022 3' -66.8 NC_002794.1 + 137323 0.7 0.298362
Target:  5'- cGGuUCCGCGgaagguuCCGCggacGGCUCGGCGUCgUCg -3'
miRNA:   3'- -CC-GGGCGC-------GGCGa---CCGGGCCGCAG-AG- -5'
11022 3' -66.8 NC_002794.1 + 137144 0.67 0.437262
Target:  5'- cGCCCGCccggccgGCCGCccucGGuCCCGGcCG-CUCg -3'
miRNA:   3'- cCGGGCG-------CGGCGa---CC-GGGCC-GCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 136707 0.69 0.360316
Target:  5'- cGCCCgGUGCaggCGCcGGuCCCGGCGUC-Ca -3'
miRNA:   3'- cCGGG-CGCG---GCGaCC-GGGCCGCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 134153 0.7 0.311893
Target:  5'- cGGUCCGUGuuGCUGGCCgUGGCc---- -3'
miRNA:   3'- -CCGGGCGCggCGACCGG-GCCGcagag -5'
11022 3' -66.8 NC_002794.1 + 130644 0.69 0.345961
Target:  5'- cGGCCCGCccgccgccccGCCGCcGGCCgCGG-G-CUCc -3'
miRNA:   3'- -CCGGGCG----------CGGCGaCCGG-GCCgCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 128667 0.67 0.454763
Target:  5'- cGGCCgCGCgaauaaucGCCGCggcGGUCCGGaggCUCg -3'
miRNA:   3'- -CCGG-GCG--------CGGCGa--CCGGGCCgcaGAG- -5'
11022 3' -66.8 NC_002794.1 + 128164 0.73 0.183582
Target:  5'- cGGCUCGCGCCGCggacGGgUCGGUGacCUCg -3'
miRNA:   3'- -CCGGGCGCGGCGa---CCgGGCCGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 127540 0.67 0.413743
Target:  5'- uGCUgGCGCUguuggucauGCUGGCCCugauGGCGUUUa -3'
miRNA:   3'- cCGGgCGCGG---------CGACCGGG----CCGCAGAg -5'
11022 3' -66.8 NC_002794.1 + 126609 0.66 0.52462
Target:  5'- aGGCCgGCGCCGac-GUCgCGGCGUg-- -3'
miRNA:   3'- -CCGGgCGCGGCgacCGG-GCCGCAgag -5'
11022 3' -66.8 NC_002794.1 + 126390 0.67 0.438086
Target:  5'- gGGCCUGCGCgGCggcGuGCgCGGCgGUCg- -3'
miRNA:   3'- -CCGGGCGCGgCGa--C-CGgGCCG-CAGag -5'
11022 3' -66.8 NC_002794.1 + 124749 0.7 0.298996
Target:  5'- -aCCCGUGCCGCU-GCUCGGCaacuuUCUCu -3'
miRNA:   3'- ccGGGCGCGGCGAcCGGGCCGc----AGAG- -5'
11022 3' -66.8 NC_002794.1 + 123248 0.67 0.446381
Target:  5'- aGCCUGUGCCacuuucgccgGCUGGUCCGGgccgcgguCGUCg- -3'
miRNA:   3'- cCGGGCGCGG----------CGACCGGGCC--------GCAGag -5'
11022 3' -66.8 NC_002794.1 + 122662 0.66 0.488235
Target:  5'- uGCUgGCGgCGCaGGCCCGGCugugccgGUCg- -3'
miRNA:   3'- cCGGgCGCgGCGaCCGGGCCG-------CAGag -5'
11022 3' -66.8 NC_002794.1 + 122326 0.66 0.515644
Target:  5'- uGCgCGUGgCGUUGGCCCuGGcCGUC-Cg -3'
miRNA:   3'- cCGgGCGCgGCGACCGGG-CC-GCAGaG- -5'
11022 3' -66.8 NC_002794.1 + 122214 0.67 0.46323
Target:  5'- uGCCgGCGCCGCUacgauaagcGGCgCCGGaCG-CUg -3'
miRNA:   3'- cCGGgCGCGGCGA---------CCG-GGCC-GCaGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.