miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 119687 0.66 0.471778
Target:  5'- cGGCgucuCCG-GCUGCUGGgCCGGCGg--- -3'
miRNA:   3'- -CCG----GGCgCGGCGACCgGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 118265 0.72 0.205769
Target:  5'- cGGCCgGgGCgGC-GGCgCCGGCGUCg- -3'
miRNA:   3'- -CCGGgCgCGgCGaCCG-GGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 117208 0.67 0.438086
Target:  5'- gGGCCCGgGCgGCUccGGCC--GCGUCa- -3'
miRNA:   3'- -CCGGGCgCGgCGA--CCGGgcCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 116978 0.68 0.375082
Target:  5'- gGGCCCaGCagGUCGUUcGCCguccgCGGCGUCUCg -3'
miRNA:   3'- -CCGGG-CG--CGGCGAcCGG-----GCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 116893 0.74 0.156084
Target:  5'- cGCCgGCGCCGuCUccggcggccGGUCCGGCGUCg- -3'
miRNA:   3'- cCGGgCGCGGC-GA---------CCGGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 116645 0.67 0.438086
Target:  5'- gGGCCCG-GCCGUccGGCUCuugaGGCGcugCUCg -3'
miRNA:   3'- -CCGGGCgCGGCGa-CCGGG----CCGCa--GAG- -5'
11022 3' -66.8 NC_002794.1 + 115826 0.66 0.489108
Target:  5'- cGCCUGgauCgGCggGGCCCGGCGggCUCg -3'
miRNA:   3'- cCGGGCgc-GgCGa-CCGGGCCGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 115095 0.67 0.46323
Target:  5'- cGCCCGCaGCCGC-GcGUCCG-CGUCgUCa -3'
miRNA:   3'- cCGGGCG-CGGCGaC-CGGGCcGCAG-AG- -5'
11022 3' -66.8 NC_002794.1 + 114817 0.66 0.480405
Target:  5'- aGGCCCGCG-CGCUc-UCCGGCGgccgagucggCUCg -3'
miRNA:   3'- -CCGGGCGCgGCGAccGGGCCGCa---------GAG- -5'
11022 3' -66.8 NC_002794.1 + 114747 0.67 0.413743
Target:  5'- aGCCgGCGCCGCccgccGGCgCCGGUc-CUCg -3'
miRNA:   3'- cCGGgCGCGGCGa----CCG-GGCCGcaGAG- -5'
11022 3' -66.8 NC_002794.1 + 114186 0.7 0.311238
Target:  5'- uGGCCagGCGCaGC-GGCgccacggCCGGCGUCUCc -3'
miRNA:   3'- -CCGGg-CGCGgCGaCCG-------GGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 113685 0.66 0.51475
Target:  5'- aGGCCCgccaccgucggcaGCGCCagguuCUGGCUcagggaCGGCGUCg- -3'
miRNA:   3'- -CCGGG-------------CGCGGc----GACCGG------GCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 113534 0.72 0.218691
Target:  5'- cGGCUCgGCGUCGCcGGCCCGGagcaggcgccggacCGUCUg -3'
miRNA:   3'- -CCGGG-CGCGGCGaCCGGGCC--------------GCAGAg -5'
11022 3' -66.8 NC_002794.1 + 112240 0.75 0.132052
Target:  5'- aGGgCCGCcgcgaacGCCGCcGGCgggaCCGGCGUCUCg -3'
miRNA:   3'- -CCgGGCG-------CGGCGaCCG----GGCCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 111752 0.66 0.480405
Target:  5'- aGCUgGCGCCGCgcGGCgCCgucggGGCGggCUCg -3'
miRNA:   3'- cCGGgCGCGGCGa-CCG-GG-----CCGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 109521 0.72 0.220169
Target:  5'- cGGCCCGCGCUcguucgGCgucgGGCCgGGCGg--- -3'
miRNA:   3'- -CCGGGCGCGG------CGa---CCGGgCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 108201 0.67 0.46323
Target:  5'- cGGCgCUGCGCCGCc-GCgCCGGC--CUCg -3'
miRNA:   3'- -CCG-GGCGCGGCGacCG-GGCCGcaGAG- -5'
11022 3' -66.8 NC_002794.1 + 107751 0.73 0.192192
Target:  5'- cGCUucgCGCGCCGCUGGCUgGaGCGcgCUCg -3'
miRNA:   3'- cCGG---GCGCGGCGACCGGgC-CGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 107240 0.7 0.298996
Target:  5'- gGGgCgGCGUCGCggaccUGGCCCGGCGg--- -3'
miRNA:   3'- -CCgGgCGCGGCG-----ACCGGGCCGCagag -5'
11022 3' -66.8 NC_002794.1 + 107190 0.69 0.325207
Target:  5'- cGGCgCCGcCGCCGCcggccucGCCCGGCGcCg- -3'
miRNA:   3'- -CCG-GGC-GCGGCGac-----CGGGCCGCaGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.