miRNA display CGI


Results 61 - 80 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 3' -66.8 NC_002794.1 + 48073 0.66 0.512964
Target:  5'- uGGCCgGCcagcgggagcagccGCCGCUcG-CCGGCGUCa- -3'
miRNA:   3'- -CCGGgCG--------------CGGCGAcCgGGCCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 34056 0.66 0.510289
Target:  5'- cGGCCCGCGCacgacccgccguuccCGCcggcGGCCgGGCagccGUCg- -3'
miRNA:   3'- -CCGGGCGCG---------------GCGa---CCGGgCCG----CAGag -5'
11022 3' -66.8 NC_002794.1 + 154394 0.66 0.497885
Target:  5'- cGCCCGUucgcgugguGCCGgUGGCCa-GCG-CUCg -3'
miRNA:   3'- cCGGGCG---------CGGCgACCGGgcCGCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 97702 0.66 0.497885
Target:  5'- cGCCCGU-CCGCguUGuGCCCaaaauGGCGUUUCu -3'
miRNA:   3'- cCGGGCGcGGCG--AC-CGGG-----CCGCAGAG- -5'
11022 3' -66.8 NC_002794.1 + 60082 0.66 0.489108
Target:  5'- cGCCCGCGCagguGCUccacGGCCagcuGGcCGUCUg -3'
miRNA:   3'- cCGGGCGCGg---CGA----CCGGg---CC-GCAGAg -5'
11022 3' -66.8 NC_002794.1 + 29761 0.66 0.497885
Target:  5'- aGCCCGCGCCGagcGUCuCGGcCG-CUCg -3'
miRNA:   3'- cCGGGCGCGGCgacCGG-GCC-GCaGAG- -5'
11022 3' -66.8 NC_002794.1 + 115826 0.66 0.489108
Target:  5'- cGCCUGgauCgGCggGGCCCGGCGggCUCg -3'
miRNA:   3'- cCGGGCgc-GgCGa-CCGGGCCGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 122662 0.66 0.488235
Target:  5'- uGCUgGCGgCGCaGGCCCGGCugugccgGUCg- -3'
miRNA:   3'- cCGGgCGCgGCGaCCGGGCCG-------CAGag -5'
11022 3' -66.8 NC_002794.1 + 114817 0.66 0.480405
Target:  5'- aGGCCCGCG-CGCUc-UCCGGCGgccgagucggCUCg -3'
miRNA:   3'- -CCGGGCGCgGCGAccGGGCCGCa---------GAG- -5'
11022 3' -66.8 NC_002794.1 + 111752 0.66 0.480405
Target:  5'- aGCUgGCGCCGCgcGGCgCCgucggGGCGggCUCg -3'
miRNA:   3'- cCGGgCGCGGCGa-CCG-GG-----CCGCa-GAG- -5'
11022 3' -66.8 NC_002794.1 + 190669 0.66 0.501416
Target:  5'- cGCCCGCcgcGCCGCcgGGucuccacgcacaccuCCCGGCGcagcgucggguUCUCc -3'
miRNA:   3'- cCGGGCG---CGGCGa-CC---------------GGGCCGC-----------AGAG- -5'
11022 3' -66.8 NC_002794.1 + 12592 0.66 0.497885
Target:  5'- cGCCUGCGUccccaCGCUGcGCCaccaGcGCGUCUg -3'
miRNA:   3'- cCGGGCGCG-----GCGAC-CGGg---C-CGCAGAg -5'
11022 3' -66.8 NC_002794.1 + 193809 0.66 0.506732
Target:  5'- cGCCCGC-UCGuCUGGCgCCGacGCGUCg- -3'
miRNA:   3'- cCGGGCGcGGC-GACCG-GGC--CGCAGag -5'
11022 3' -66.8 NC_002794.1 + 65753 0.66 0.508509
Target:  5'- cGGcCCCGCGCCGCcgccgcccgugguggGGCCgagcggaucacacgaGGCGUUg- -3'
miRNA:   3'- -CC-GGGCGCGGCGa--------------CCGGg--------------CCGCAGag -5'
11022 3' -66.8 NC_002794.1 + 44218 0.66 0.506732
Target:  5'- cGGCUCggGCGCCGagGGCUCGGUGccgggcggCUCg -3'
miRNA:   3'- -CCGGG--CGCGGCgaCCGGGCCGCa-------GAG- -5'
11022 3' -66.8 NC_002794.1 + 66853 0.66 0.506732
Target:  5'- cGUCgGCGCgGCgaGGCCgCGGCGUg-- -3'
miRNA:   3'- cCGGgCGCGgCGa-CCGG-GCCGCAgag -5'
11022 3' -66.8 NC_002794.1 + 92038 0.66 0.506732
Target:  5'- uGCaCUGCGCCGUgaaccUGuGUCCGGCGUg-- -3'
miRNA:   3'- cCG-GGCGCGGCG-----AC-CGGGCCGCAgag -5'
11022 3' -66.8 NC_002794.1 + 44522 0.66 0.506732
Target:  5'- gGGCCCGUGuCCGCgagcGCgCCGuCGUCgUCg -3'
miRNA:   3'- -CCGGGCGC-GGCGac--CG-GGCcGCAG-AG- -5'
11022 3' -66.8 NC_002794.1 + 40569 0.66 0.506732
Target:  5'- cGUUCGCGCCGUccUGGCCgCGGgcccUCUCc -3'
miRNA:   3'- cCGGGCGCGGCG--ACCGG-GCCgc--AGAG- -5'
11022 3' -66.8 NC_002794.1 + 769 0.66 0.497885
Target:  5'- gGGCCCGCGgUGCauuUGGCaCGGUGcCa- -3'
miRNA:   3'- -CCGGGCGCgGCG---ACCGgGCCGCaGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.