miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 5' -53.7 NC_002794.1 + 58742 0.66 0.978158
Target:  5'- aGCGGGCUcaa-CGGg--CAGCUGGCGg -3'
miRNA:   3'- -CGUUCGAcaagGUCaugGUCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 71145 0.66 0.978158
Target:  5'- aGCGGGCUGUgccgccCCGGcaagcgcACCAGCaccccccGGCGg -3'
miRNA:   3'- -CGUUCGACAa-----GGUCa------UGGUCGa------CCGC- -5'
11022 5' -53.7 NC_002794.1 + 191490 0.66 0.975721
Target:  5'- aCGGGCgaucgUCCgccaccgagaGGUGCCAGCgccgGGCGu -3'
miRNA:   3'- cGUUCGaca--AGG----------UCAUGGUCGa---CCGC- -5'
11022 5' -53.7 NC_002794.1 + 90946 0.66 0.975721
Target:  5'- gGCGGGCUGUgcgCCgAGgcccggGCCcGCUucGGCGu -3'
miRNA:   3'- -CGUUCGACAa--GG-UCa-----UGGuCGA--CCGC- -5'
11022 5' -53.7 NC_002794.1 + 132094 0.66 0.974167
Target:  5'- cGUAAccGCcGUUCgAGUGCCaugggguggacggucGGCUGGCa -3'
miRNA:   3'- -CGUU--CGaCAAGgUCAUGG---------------UCGACCGc -5'
11022 5' -53.7 NC_002794.1 + 69626 0.66 0.973092
Target:  5'- cGCGAGgaGgaCCAGcAUCGGCaaGGCGg -3'
miRNA:   3'- -CGUUCgaCaaGGUCaUGGUCGa-CCGC- -5'
11022 5' -53.7 NC_002794.1 + 142050 0.66 0.970262
Target:  5'- cGUAccGGCgGUUCCGGUGCgGGCUccucGGUc -3'
miRNA:   3'- -CGU--UCGaCAAGGUCAUGgUCGA----CCGc -5'
11022 5' -53.7 NC_002794.1 + 8469 0.66 0.967225
Target:  5'- --cGGCUGUUCCGG-ACCAcgcaacgcucGCUGGa- -3'
miRNA:   3'- cguUCGACAAGGUCaUGGU----------CGACCgc -5'
11022 5' -53.7 NC_002794.1 + 136327 0.66 0.967225
Target:  5'- cGC-AGCUcUUCuCGGUggcggGCCAGCgUGGCGu -3'
miRNA:   3'- -CGuUCGAcAAG-GUCA-----UGGUCG-ACCGC- -5'
11022 5' -53.7 NC_002794.1 + 55626 0.66 0.967225
Target:  5'- uGCAcGCUGg-CCAGcacgcggGCCGGCaGGCGc -3'
miRNA:   3'- -CGUuCGACaaGGUCa------UGGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 137646 0.67 0.960507
Target:  5'- gGCGGGCgccgGgccUCCGGcGCC-GCUGGUGc -3'
miRNA:   3'- -CGUUCGa---Ca--AGGUCaUGGuCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 63996 0.67 0.960507
Target:  5'- aGCGGGCUccgUCUGGguccugCGGCUGGCGa -3'
miRNA:   3'- -CGUUCGAca-AGGUCaug---GUCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 138359 0.67 0.960507
Target:  5'- cGCGAGCgaucugCUuGUACCGGUcGGCGa -3'
miRNA:   3'- -CGUUCGacaa--GGuCAUGGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 122001 0.67 0.960507
Target:  5'- cGgGAGCUGUUCCAcGUcgucuucuUCGGCgccgGGCGu -3'
miRNA:   3'- -CgUUCGACAAGGU-CAu-------GGUCGa---CCGC- -5'
11022 5' -53.7 NC_002794.1 + 104544 0.67 0.956814
Target:  5'- -aGAGCUGcgCCAGcgUCAGCUGGa- -3'
miRNA:   3'- cgUUCGACaaGGUCauGGUCGACCgc -5'
11022 5' -53.7 NC_002794.1 + 13021 0.67 0.956814
Target:  5'- cGCAcGCgccUGUUCCucgGGUACCGGCgucuGCGg -3'
miRNA:   3'- -CGUuCG---ACAAGG---UCAUGGUCGac--CGC- -5'
11022 5' -53.7 NC_002794.1 + 120522 0.67 0.94874
Target:  5'- uGCAGGCgGUggcccCCGGgcugACCAGcCUGGUc -3'
miRNA:   3'- -CGUUCGaCAa----GGUCa---UGGUC-GACCGc -5'
11022 5' -53.7 NC_002794.1 + 192022 0.68 0.934852
Target:  5'- cGCGgcuGCUGUUUCuGUGgCGGC-GGCGg -3'
miRNA:   3'- -CGUu--CGACAAGGuCAUgGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 68265 0.68 0.934852
Target:  5'- uGC-AGCUGUUcgacgagcaCCGG-GCCAGCcgGGCGu -3'
miRNA:   3'- -CGuUCGACAA---------GGUCaUGGUCGa-CCGC- -5'
11022 5' -53.7 NC_002794.1 + 59988 0.68 0.92974
Target:  5'- cGCuGGCUGcgCCAGUucACCGGCgccGaGCGc -3'
miRNA:   3'- -CGuUCGACaaGGUCA--UGGUCGa--C-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.