Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11022 | 5' | -53.7 | NC_002794.1 | + | 192022 | 0.68 | 0.934852 |
Target: 5'- cGCGgcuGCUGUUUCuGUGgCGGC-GGCGg -3' miRNA: 3'- -CGUu--CGACAAGGuCAUgGUCGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 114550 | 0.69 | 0.912948 |
Target: 5'- cGCGAGCUGUUCUucgGCCAGgCgcaGCGu -3' miRNA: 3'- -CGUUCGACAAGGucaUGGUC-Gac-CGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 102625 | 0.69 | 0.893992 |
Target: 5'- cGCAccuGGCgGUcaUCC---GCCGGCUGGCGg -3' miRNA: 3'- -CGU---UCGaCA--AGGucaUGGUCGACCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 136714 | 0.69 | 0.887203 |
Target: 5'- uGCAGGCg---CCGGUcCCGGCguccaGGCGg -3' miRNA: 3'- -CGUUCGacaaGGUCAuGGUCGa----CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 90682 | 0.71 | 0.79868 |
Target: 5'- cGCGuGGCUGUUCguGUGCCcGC-GGCa -3' miRNA: 3'- -CGU-UCGACAAGguCAUGGuCGaCCGc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 95865 | 0.71 | 0.832729 |
Target: 5'- gGCGGGCcGUUUCAGUGuggcgacCCGGC-GGCGa -3' miRNA: 3'- -CGUUCGaCAAGGUCAU-------GGUCGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 184661 | 0.71 | 0.79868 |
Target: 5'- aGCAacGGCUGUagucCCAGUACCAguaccaggacGCcGGCGg -3' miRNA: 3'- -CGU--UCGACAa---GGUCAUGGU----------CGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 44386 | 0.71 | 0.833567 |
Target: 5'- cGCGAcGCUcgacgcgcccGUUCCGGUcugACCGGCcGGCGc -3' miRNA: 3'- -CGUU-CGA----------CAAGGUCA---UGGUCGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 60088 | 0.74 | 0.681707 |
Target: 5'- cGCAGGUgc-UCCAcgGCCAGCUGGCc -3' miRNA: 3'- -CGUUCGacaAGGUcaUGGUCGACCGc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 117961 | 0.76 | 0.548421 |
Target: 5'- aGCAGGUUGUa-CAGggccACCAGCUGGUGg -3' miRNA: 3'- -CGUUCGACAagGUCa---UGGUCGACCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 122671 | 0.77 | 0.508667 |
Target: 5'- cGCAggcccGGCUGUgCCGGUcgcGCCAGCgccgGGCGa -3' miRNA: 3'- -CGU-----UCGACAaGGUCA---UGGUCGa---CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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