miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 5' -53.7 NC_002794.1 + 122671 0.77 0.508667
Target:  5'- cGCAggcccGGCUGUgCCGGUcgcGCCAGCgccgGGCGa -3'
miRNA:   3'- -CGU-----UCGACAaGGUCA---UGGUCGa---CCGC- -5'
11022 5' -53.7 NC_002794.1 + 117961 0.76 0.548421
Target:  5'- aGCAGGUUGUa-CAGggccACCAGCUGGUGg -3'
miRNA:   3'- -CGUUCGACAagGUCa---UGGUCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 60088 0.74 0.681707
Target:  5'- cGCAGGUgc-UCCAcgGCCAGCUGGCc -3'
miRNA:   3'- -CGUUCGacaAGGUcaUGGUCGACCGc -5'
11022 5' -53.7 NC_002794.1 + 90682 0.71 0.79868
Target:  5'- cGCGuGGCUGUUCguGUGCCcGC-GGCa -3'
miRNA:   3'- -CGU-UCGACAAGguCAUGGuCGaCCGc -5'
11022 5' -53.7 NC_002794.1 + 184661 0.71 0.79868
Target:  5'- aGCAacGGCUGUagucCCAGUACCAguaccaggacGCcGGCGg -3'
miRNA:   3'- -CGU--UCGACAa---GGUCAUGGU----------CGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 95865 0.71 0.832729
Target:  5'- gGCGGGCcGUUUCAGUGuggcgacCCGGC-GGCGa -3'
miRNA:   3'- -CGUUCGaCAAGGUCAU-------GGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 44386 0.71 0.833567
Target:  5'- cGCGAcGCUcgacgcgcccGUUCCGGUcugACCGGCcGGCGc -3'
miRNA:   3'- -CGUU-CGA----------CAAGGUCA---UGGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 136714 0.69 0.887203
Target:  5'- uGCAGGCg---CCGGUcCCGGCguccaGGCGg -3'
miRNA:   3'- -CGUUCGacaaGGUCAuGGUCGa----CCGC- -5'
11022 5' -53.7 NC_002794.1 + 102625 0.69 0.893992
Target:  5'- cGCAccuGGCgGUcaUCC---GCCGGCUGGCGg -3'
miRNA:   3'- -CGU---UCGaCA--AGGucaUGGUCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 114550 0.69 0.912948
Target:  5'- cGCGAGCUGUUCUucgGCCAGgCgcaGCGu -3'
miRNA:   3'- -CGUUCGACAAGGucaUGGUC-Gac-CGC- -5'
11022 5' -53.7 NC_002794.1 + 122997 0.68 0.918788
Target:  5'- uGCGGGCcGUgcugaCGG-GCCGGCUGGCc -3'
miRNA:   3'- -CGUUCGaCAag---GUCaUGGUCGACCGc -5'
11022 5' -53.7 NC_002794.1 + 59988 0.68 0.92974
Target:  5'- cGCuGGCUGcgCCAGUucACCGGCgccGaGCGc -3'
miRNA:   3'- -CGuUCGACaaGGUCA--UGGUCGa--C-CGC- -5'
11022 5' -53.7 NC_002794.1 + 68265 0.68 0.934852
Target:  5'- uGC-AGCUGUUcgacgagcaCCGG-GCCAGCcgGGCGu -3'
miRNA:   3'- -CGuUCGACAA---------GGUCaUGGUCGa-CCGC- -5'
11022 5' -53.7 NC_002794.1 + 192022 0.68 0.934852
Target:  5'- cGCGgcuGCUGUUUCuGUGgCGGC-GGCGg -3'
miRNA:   3'- -CGUu--CGACAAGGuCAUgGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 120522 0.67 0.94874
Target:  5'- uGCAGGCgGUggcccCCGGgcugACCAGcCUGGUc -3'
miRNA:   3'- -CGUUCGaCAa----GGUCa---UGGUC-GACCGc -5'
11022 5' -53.7 NC_002794.1 + 104544 0.67 0.956814
Target:  5'- -aGAGCUGcgCCAGcgUCAGCUGGa- -3'
miRNA:   3'- cgUUCGACaaGGUCauGGUCGACCgc -5'
11022 5' -53.7 NC_002794.1 + 13021 0.67 0.956814
Target:  5'- cGCAcGCgccUGUUCCucgGGUACCGGCgucuGCGg -3'
miRNA:   3'- -CGUuCG---ACAAGG---UCAUGGUCGac--CGC- -5'
11022 5' -53.7 NC_002794.1 + 138359 0.67 0.960507
Target:  5'- cGCGAGCgaucugCUuGUACCGGUcGGCGa -3'
miRNA:   3'- -CGUUCGacaa--GGuCAUGGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 137646 0.67 0.960507
Target:  5'- gGCGGGCgccgGgccUCCGGcGCC-GCUGGUGc -3'
miRNA:   3'- -CGUUCGa---Ca--AGGUCaUGGuCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 63996 0.67 0.960507
Target:  5'- aGCGGGCUccgUCUGGguccugCGGCUGGCGa -3'
miRNA:   3'- -CGUUCGAca-AGGUCaug---GUCGACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.