Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11022 | 5' | -53.7 | NC_002794.1 | + | 58742 | 0.66 | 0.978158 |
Target: 5'- aGCGGGCUcaa-CGGg--CAGCUGGCGg -3' miRNA: 3'- -CGUUCGAcaagGUCaugGUCGACCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 71145 | 0.66 | 0.978158 |
Target: 5'- aGCGGGCUGUgccgccCCGGcaagcgcACCAGCaccccccGGCGg -3' miRNA: 3'- -CGUUCGACAa-----GGUCa------UGGUCGa------CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 191490 | 0.66 | 0.975721 |
Target: 5'- aCGGGCgaucgUCCgccaccgagaGGUGCCAGCgccgGGCGu -3' miRNA: 3'- cGUUCGaca--AGG----------UCAUGGUCGa---CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 90946 | 0.66 | 0.975721 |
Target: 5'- gGCGGGCUGUgcgCCgAGgcccggGCCcGCUucGGCGu -3' miRNA: 3'- -CGUUCGACAa--GG-UCa-----UGGuCGA--CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 132094 | 0.66 | 0.974167 |
Target: 5'- cGUAAccGCcGUUCgAGUGCCaugggguggacggucGGCUGGCa -3' miRNA: 3'- -CGUU--CGaCAAGgUCAUGG---------------UCGACCGc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 69626 | 0.66 | 0.973092 |
Target: 5'- cGCGAGgaGgaCCAGcAUCGGCaaGGCGg -3' miRNA: 3'- -CGUUCgaCaaGGUCaUGGUCGa-CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 142050 | 0.66 | 0.970262 |
Target: 5'- cGUAccGGCgGUUCCGGUGCgGGCUccucGGUc -3' miRNA: 3'- -CGU--UCGaCAAGGUCAUGgUCGA----CCGc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 8469 | 0.66 | 0.967225 |
Target: 5'- --cGGCUGUUCCGG-ACCAcgcaacgcucGCUGGa- -3' miRNA: 3'- cguUCGACAAGGUCaUGGU----------CGACCgc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 136327 | 0.66 | 0.967225 |
Target: 5'- cGC-AGCUcUUCuCGGUggcggGCCAGCgUGGCGu -3' miRNA: 3'- -CGuUCGAcAAG-GUCA-----UGGUCG-ACCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 55626 | 0.66 | 0.967225 |
Target: 5'- uGCAcGCUGg-CCAGcacgcggGCCGGCaGGCGc -3' miRNA: 3'- -CGUuCGACaaGGUCa------UGGUCGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 137646 | 0.67 | 0.960507 |
Target: 5'- gGCGGGCgccgGgccUCCGGcGCC-GCUGGUGc -3' miRNA: 3'- -CGUUCGa---Ca--AGGUCaUGGuCGACCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 63996 | 0.67 | 0.960507 |
Target: 5'- aGCGGGCUccgUCUGGguccugCGGCUGGCGa -3' miRNA: 3'- -CGUUCGAca-AGGUCaug---GUCGACCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 138359 | 0.67 | 0.960507 |
Target: 5'- cGCGAGCgaucugCUuGUACCGGUcGGCGa -3' miRNA: 3'- -CGUUCGacaa--GGuCAUGGUCGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 122001 | 0.67 | 0.960507 |
Target: 5'- cGgGAGCUGUUCCAcGUcgucuucuUCGGCgccgGGCGu -3' miRNA: 3'- -CgUUCGACAAGGU-CAu-------GGUCGa---CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 104544 | 0.67 | 0.956814 |
Target: 5'- -aGAGCUGcgCCAGcgUCAGCUGGa- -3' miRNA: 3'- cgUUCGACaaGGUCauGGUCGACCgc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 13021 | 0.67 | 0.956814 |
Target: 5'- cGCAcGCgccUGUUCCucgGGUACCGGCgucuGCGg -3' miRNA: 3'- -CGUuCG---ACAAGG---UCAUGGUCGac--CGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 120522 | 0.67 | 0.94874 |
Target: 5'- uGCAGGCgGUggcccCCGGgcugACCAGcCUGGUc -3' miRNA: 3'- -CGUUCGaCAa----GGUCa---UGGUC-GACCGc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 192022 | 0.68 | 0.934852 |
Target: 5'- cGCGgcuGCUGUUUCuGUGgCGGC-GGCGg -3' miRNA: 3'- -CGUu--CGACAAGGuCAUgGUCGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 68265 | 0.68 | 0.934852 |
Target: 5'- uGC-AGCUGUUcgacgagcaCCGG-GCCAGCcgGGCGu -3' miRNA: 3'- -CGuUCGACAA---------GGUCaUGGUCGa-CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 59988 | 0.68 | 0.92974 |
Target: 5'- cGCuGGCUGcgCCAGUucACCGGCgccGaGCGc -3' miRNA: 3'- -CGuUCGACaaGGUCA--UGGUCGa--C-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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