miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 5' -53.7 NC_002794.1 + 122671 0.77 0.508667
Target:  5'- cGCAggcccGGCUGUgCCGGUcgcGCCAGCgccgGGCGa -3'
miRNA:   3'- -CGU-----UCGACAaGGUCA---UGGUCGa---CCGC- -5'
11022 5' -53.7 NC_002794.1 + 122997 0.68 0.918788
Target:  5'- uGCGGGCcGUgcugaCGG-GCCGGCUGGCc -3'
miRNA:   3'- -CGUUCGaCAag---GUCaUGGUCGACCGc -5'
11022 5' -53.7 NC_002794.1 + 132094 0.66 0.974167
Target:  5'- cGUAAccGCcGUUCgAGUGCCaugggguggacggucGGCUGGCa -3'
miRNA:   3'- -CGUU--CGaCAAGgUCAUGG---------------UCGACCGc -5'
11022 5' -53.7 NC_002794.1 + 136327 0.66 0.967225
Target:  5'- cGC-AGCUcUUCuCGGUggcggGCCAGCgUGGCGu -3'
miRNA:   3'- -CGuUCGAcAAG-GUCA-----UGGUCG-ACCGC- -5'
11022 5' -53.7 NC_002794.1 + 136714 0.69 0.887203
Target:  5'- uGCAGGCg---CCGGUcCCGGCguccaGGCGg -3'
miRNA:   3'- -CGUUCGacaaGGUCAuGGUCGa----CCGC- -5'
11022 5' -53.7 NC_002794.1 + 137646 0.67 0.960507
Target:  5'- gGCGGGCgccgGgccUCCGGcGCC-GCUGGUGc -3'
miRNA:   3'- -CGUUCGa---Ca--AGGUCaUGGuCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 138359 0.67 0.960507
Target:  5'- cGCGAGCgaucugCUuGUACCGGUcGGCGa -3'
miRNA:   3'- -CGUUCGacaa--GGuCAUGGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 142050 0.66 0.970262
Target:  5'- cGUAccGGCgGUUCCGGUGCgGGCUccucGGUc -3'
miRNA:   3'- -CGU--UCGaCAAGGUCAUGgUCGA----CCGc -5'
11022 5' -53.7 NC_002794.1 + 184661 0.71 0.79868
Target:  5'- aGCAacGGCUGUagucCCAGUACCAguaccaggacGCcGGCGg -3'
miRNA:   3'- -CGU--UCGACAa---GGUCAUGGU----------CGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 191490 0.66 0.975721
Target:  5'- aCGGGCgaucgUCCgccaccgagaGGUGCCAGCgccgGGCGu -3'
miRNA:   3'- cGUUCGaca--AGG----------UCAUGGUCGa---CCGC- -5'
11022 5' -53.7 NC_002794.1 + 192022 0.68 0.934852
Target:  5'- cGCGgcuGCUGUUUCuGUGgCGGC-GGCGg -3'
miRNA:   3'- -CGUu--CGACAAGGuCAUgGUCGaCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.