miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11022 5' -53.7 NC_002794.1 + 71145 0.66 0.978158
Target:  5'- aGCGGGCUGUgccgccCCGGcaagcgcACCAGCaccccccGGCGg -3'
miRNA:   3'- -CGUUCGACAa-----GGUCa------UGGUCGa------CCGC- -5'
11022 5' -53.7 NC_002794.1 + 69626 0.66 0.973092
Target:  5'- cGCGAGgaGgaCCAGcAUCGGCaaGGCGg -3'
miRNA:   3'- -CGUUCgaCaaGGUCaUGGUCGa-CCGC- -5'
11022 5' -53.7 NC_002794.1 + 68265 0.68 0.934852
Target:  5'- uGC-AGCUGUUcgacgagcaCCGG-GCCAGCcgGGCGu -3'
miRNA:   3'- -CGuUCGACAA---------GGUCaUGGUCGa-CCGC- -5'
11022 5' -53.7 NC_002794.1 + 63996 0.67 0.960507
Target:  5'- aGCGGGCUccgUCUGGguccugCGGCUGGCGa -3'
miRNA:   3'- -CGUUCGAca-AGGUCaug---GUCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 60088 0.74 0.681707
Target:  5'- cGCAGGUgc-UCCAcgGCCAGCUGGCc -3'
miRNA:   3'- -CGUUCGacaAGGUcaUGGUCGACCGc -5'
11022 5' -53.7 NC_002794.1 + 59988 0.68 0.92974
Target:  5'- cGCuGGCUGcgCCAGUucACCGGCgccGaGCGc -3'
miRNA:   3'- -CGuUCGACaaGGUCA--UGGUCGa--C-CGC- -5'
11022 5' -53.7 NC_002794.1 + 58742 0.66 0.978158
Target:  5'- aGCGGGCUcaa-CGGg--CAGCUGGCGg -3'
miRNA:   3'- -CGUUCGAcaagGUCaugGUCGACCGC- -5'
11022 5' -53.7 NC_002794.1 + 55626 0.66 0.967225
Target:  5'- uGCAcGCUGg-CCAGcacgcggGCCGGCaGGCGc -3'
miRNA:   3'- -CGUuCGACaaGGUCa------UGGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 44386 0.71 0.833567
Target:  5'- cGCGAcGCUcgacgcgcccGUUCCGGUcugACCGGCcGGCGc -3'
miRNA:   3'- -CGUU-CGA----------CAAGGUCA---UGGUCGaCCGC- -5'
11022 5' -53.7 NC_002794.1 + 13021 0.67 0.956814
Target:  5'- cGCAcGCgccUGUUCCucgGGUACCGGCgucuGCGg -3'
miRNA:   3'- -CGUuCG---ACAAGG---UCAUGGUCGac--CGC- -5'
11022 5' -53.7 NC_002794.1 + 8469 0.66 0.967225
Target:  5'- --cGGCUGUUCCGG-ACCAcgcaacgcucGCUGGa- -3'
miRNA:   3'- cguUCGACAAGGUCaUGGU----------CGACCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.