Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11022 | 5' | -53.7 | NC_002794.1 | + | 90946 | 0.66 | 0.975721 |
Target: 5'- gGCGGGCUGUgcgCCgAGgcccggGCCcGCUucGGCGu -3' miRNA: 3'- -CGUUCGACAa--GG-UCa-----UGGuCGA--CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 142050 | 0.66 | 0.970262 |
Target: 5'- cGUAccGGCgGUUCCGGUGCgGGCUccucGGUc -3' miRNA: 3'- -CGU--UCGaCAAGGUCAUGgUCGA----CCGc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 69626 | 0.66 | 0.973092 |
Target: 5'- cGCGAGgaGgaCCAGcAUCGGCaaGGCGg -3' miRNA: 3'- -CGUUCgaCaaGGUCaUGGUCGa-CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 8469 | 0.66 | 0.967225 |
Target: 5'- --cGGCUGUUCCGG-ACCAcgcaacgcucGCUGGa- -3' miRNA: 3'- cguUCGACAAGGUCaUGGU----------CGACCgc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 136327 | 0.66 | 0.967225 |
Target: 5'- cGC-AGCUcUUCuCGGUggcggGCCAGCgUGGCGu -3' miRNA: 3'- -CGuUCGAcAAG-GUCA-----UGGUCG-ACCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 55626 | 0.66 | 0.967225 |
Target: 5'- uGCAcGCUGg-CCAGcacgcggGCCGGCaGGCGc -3' miRNA: 3'- -CGUuCGACaaGGUCa------UGGUCGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 122001 | 0.67 | 0.960507 |
Target: 5'- cGgGAGCUGUUCCAcGUcgucuucuUCGGCgccgGGCGu -3' miRNA: 3'- -CgUUCGACAAGGU-CAu-------GGUCGa---CCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 138359 | 0.67 | 0.960507 |
Target: 5'- cGCGAGCgaucugCUuGUACCGGUcGGCGa -3' miRNA: 3'- -CGUUCGacaa--GGuCAUGGUCGaCCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 104544 | 0.67 | 0.956814 |
Target: 5'- -aGAGCUGcgCCAGcgUCAGCUGGa- -3' miRNA: 3'- cgUUCGACaaGGUCauGGUCGACCgc -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 63996 | 0.67 | 0.960507 |
Target: 5'- aGCGGGCUccgUCUGGguccugCGGCUGGCGa -3' miRNA: 3'- -CGUUCGAca-AGGUCaug---GUCGACCGC- -5' |
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11022 | 5' | -53.7 | NC_002794.1 | + | 122671 | 0.77 | 0.508667 |
Target: 5'- cGCAggcccGGCUGUgCCGGUcgcGCCAGCgccgGGCGa -3' miRNA: 3'- -CGU-----UCGACAaGGUCA---UGGUCGa---CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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