miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 3' -54.5 NC_002794.1 + 55911 0.66 0.972938
Target:  5'- aGUCGUCgauCUCGGGC-ACGgucaggaaGCgGCAGa -3'
miRNA:   3'- -CAGUAGau-GAGCCCGcUGC--------UGgUGUC- -5'
11024 3' -54.5 NC_002794.1 + 136560 0.66 0.972668
Target:  5'- cUCGUCUcgcagguGCUCGGGCGucuCGAUC-CGa -3'
miRNA:   3'- cAGUAGA-------UGAGCCCGCu--GCUGGuGUc -5'
11024 3' -54.5 NC_002794.1 + 48536 0.66 0.97015
Target:  5'- -aCAg--GCUCGGGuCGGcCGACCACu- -3'
miRNA:   3'- caGUagaUGAGCCC-GCU-GCUGGUGuc -5'
11024 3' -54.5 NC_002794.1 + 32845 0.66 0.968381
Target:  5'- cUCAUCgguagcgGCagcggccgagccggCGGGCGGCGGCgGCGGc -3'
miRNA:   3'- cAGUAGa------UGa-------------GCCCGCUGCUGgUGUC- -5'
11024 3' -54.5 NC_002794.1 + 151039 0.66 0.967161
Target:  5'- -cCGUCUGaugaCGGGCGAgugcaCGGCCGCGc -3'
miRNA:   3'- caGUAGAUga--GCCCGCU-----GCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 117203 0.66 0.967161
Target:  5'- -gCGUCggGCcCGGGCGGCuccGGCCGCGu -3'
miRNA:   3'- caGUAGa-UGaGCCCGCUG---CUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 70054 0.66 0.967161
Target:  5'- gGUCGcCcGgUCGGGCGGCcgcaGCCGCAGc -3'
miRNA:   3'- -CAGUaGaUgAGCCCGCUGc---UGGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 160316 0.66 0.963967
Target:  5'- uUCGUCUugggGCUggagcgcggaUGGGCGACGAauuugaCCGCGGc -3'
miRNA:   3'- cAGUAGA----UGA----------GCCCGCUGCU------GGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 111638 0.66 0.960562
Target:  5'- -gCcgCcGgUCGGGCGccGCGGCCGCGGc -3'
miRNA:   3'- caGuaGaUgAGCCCGC--UGCUGGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 112819 0.66 0.960562
Target:  5'- -gCGUCUGCUCGGcCGcCGAgUACGGc -3'
miRNA:   3'- caGUAGAUGAGCCcGCuGCUgGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 133901 0.67 0.956941
Target:  5'- cGUCGUCUggAUUCGGucuacgagaCGGCGGCCGCGc -3'
miRNA:   3'- -CAGUAGA--UGAGCCc--------GCUGCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 14666 0.67 0.956941
Target:  5'- cGUCgGUCcgACUCGcGGCGGCGGUCGCGc -3'
miRNA:   3'- -CAG-UAGa-UGAGC-CCGCUGCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 115034 0.67 0.949033
Target:  5'- -cCGUCUGCaggugcgacCGGGCGGCGgGCgGCAGc -3'
miRNA:   3'- caGUAGAUGa--------GCCCGCUGC-UGgUGUC- -5'
11024 3' -54.5 NC_002794.1 + 63644 0.67 0.946485
Target:  5'- cUCGUCUGCgugaccgccaacgucUCGGaCGACGAgCGCGGc -3'
miRNA:   3'- cAGUAGAUG---------------AGCCcGCUGCUgGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 188238 0.67 0.94474
Target:  5'- cGUCGUCg--UCGaccGGCGGCGGCgGCGGu -3'
miRNA:   3'- -CAGUAGaugAGC---CCGCUGCUGgUGUC- -5'
11024 3' -54.5 NC_002794.1 + 119507 0.67 0.94474
Target:  5'- gGUCGUCgg--CGGcGCGGagcCGGCCGCGGa -3'
miRNA:   3'- -CAGUAGaugaGCC-CGCU---GCUGGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 11526 0.67 0.94474
Target:  5'- --gAUCgaGCUgCGGGCGACcgagGACCGCGGc -3'
miRNA:   3'- cagUAGa-UGA-GCCCGCUG----CUGGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 8101 0.67 0.940216
Target:  5'- -cCAUCUcuaGCgccaccgagCGGGCGGCGGCCuccuCGGu -3'
miRNA:   3'- caGUAGA---UGa--------GCCCGCUGCUGGu---GUC- -5'
11024 3' -54.5 NC_002794.1 + 33300 0.67 0.939751
Target:  5'- -gUAUCUgcgGCUCuGGGCGGCGuccauccGCCACAc -3'
miRNA:   3'- caGUAGA---UGAG-CCCGCUGC-------UGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 107777 0.68 0.930471
Target:  5'- ------cGCUCGcccGGCGACGACCGCGu -3'
miRNA:   3'- caguagaUGAGC---CCGCUGCUGGUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.