miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 3' -54.5 NC_002794.1 + 138129 0.68 0.91979
Target:  5'- cUCGUCgccgguCUCGGGCGGCGGuuucuugCGCAGc -3'
miRNA:   3'- cAGUAGau----GAGCCCGCUGCUg------GUGUC- -5'
11024 3' -54.5 NC_002794.1 + 118317 0.68 0.925248
Target:  5'- cGUCGUCgucGCgaCGGGCGGCGAgaagaGCAGg -3'
miRNA:   3'- -CAGUAGa--UGa-GCCCGCUGCUgg---UGUC- -5'
11024 3' -54.5 NC_002794.1 + 107777 0.68 0.930471
Target:  5'- ------cGCUCGcccGGCGACGACCGCGu -3'
miRNA:   3'- caguagaUGAGC---CCGCUGCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 37871 0.68 0.930471
Target:  5'- gGUCGgcguCUCGGGCGGCGGggGCGGu -3'
miRNA:   3'- -CAGUagauGAGCCCGCUGCUggUGUC- -5'
11024 3' -54.5 NC_002794.1 + 118082 0.69 0.891696
Target:  5'- -aCAUCUggagcacggccuggaACUCGGGC-AgGGCCACGGc -3'
miRNA:   3'- caGUAGA---------------UGAGCCCGcUgCUGGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 162601 0.69 0.889025
Target:  5'- gGUCuGUCUACUCuGGCGACGGCa---- -3'
miRNA:   3'- -CAG-UAGAUGAGcCCGCUGCUGguguc -5'
11024 3' -54.5 NC_002794.1 + 43313 0.69 0.889025
Target:  5'- gGUCuugGUCUGCUCGaa-GACGACCACGc -3'
miRNA:   3'- -CAG---UAGAUGAGCccgCUGCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 95756 0.69 0.875146
Target:  5'- -----gUACUCgcgGGGCGGCGGCCGCGa -3'
miRNA:   3'- caguagAUGAG---CCCGCUGCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 71310 0.7 0.844875
Target:  5'- ------cGCUCGGGCGGCGAgCGCGc -3'
miRNA:   3'- caguagaUGAGCCCGCUGCUgGUGUc -5'
11024 3' -54.5 NC_002794.1 + 36003 0.7 0.852743
Target:  5'- uGUCG-CgggGCUCGGGCGGCGGaauCCGCc- -3'
miRNA:   3'- -CAGUaGa--UGAGCCCGCUGCU---GGUGuc -5'
11024 3' -54.5 NC_002794.1 + 119690 0.71 0.784911
Target:  5'- cGUCuccggCUGCU-GGGcCGGCGGCCACAa -3'
miRNA:   3'- -CAGua---GAUGAgCCC-GCUGCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 120040 0.71 0.802841
Target:  5'- cGUCGUCaugACggCGgcGGUGGCGGCCGCGGa -3'
miRNA:   3'- -CAGUAGa--UGa-GC--CCGCUGCUGGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 123999 0.73 0.688602
Target:  5'- gGUCAUCUACgugaagCGGGCG---GCCGCGGa -3'
miRNA:   3'- -CAGUAGAUGa-----GCCCGCugcUGGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 50756 0.73 0.688602
Target:  5'- cUCGUCcGCccCGGGCGGCGGCgACGGc -3'
miRNA:   3'- cAGUAGaUGa-GCCCGCUGCUGgUGUC- -5'
11024 3' -54.5 NC_002794.1 + 150838 0.73 0.688602
Target:  5'- cGUCGUCaGCUCcaGCGGCGGCCGCGu -3'
miRNA:   3'- -CAGUAGaUGAGccCGCUGCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 185454 0.73 0.688602
Target:  5'- --gGUCUccgcgacaaACgccgCGGGCGGCGGCCGCGGc -3'
miRNA:   3'- cagUAGA---------UGa---GCCCGCUGCUGGUGUC- -5'
11024 3' -54.5 NC_002794.1 + 83866 0.73 0.698586
Target:  5'- cGUCGUCccGgUCGGcGCGACGGCCcCGGg -3'
miRNA:   3'- -CAGUAGa-UgAGCC-CGCUGCUGGuGUC- -5'
11024 3' -54.5 NC_002794.1 + 190749 0.73 0.678572
Target:  5'- -cCGUCUcgACggGGGCGGCGGCCGCGc -3'
miRNA:   3'- caGUAGA--UGagCCCGCUGCUGGUGUc -5'
11024 3' -54.5 NC_002794.1 + 126199 0.8 0.328638
Target:  5'- cGUCAUCUACgUGGGCGAgGGCCAgCGGu -3'
miRNA:   3'- -CAGUAGAUGaGCCCGCUgCUGGU-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.