miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 121373 0.66 0.870575
Target:  5'- cGUCcgagccgGCcGCCGCCGGGaccgcggccggcgccGGGACCgCGACc -3'
miRNA:   3'- -CAGa------CGuCGGCGGCCU---------------CUUUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 49120 0.66 0.86769
Target:  5'- -cCUGCAccggGaCCgGCCGGAGGucguugucGACCCGAa -3'
miRNA:   3'- caGACGU----C-GG-CGGCCUCU--------UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 142987 0.66 0.86769
Target:  5'- -gCUGCGuGcCCGCCGuGgccAGGAACCCGGu -3'
miRNA:   3'- caGACGU-C-GGCGGC-C---UCUUUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 185755 0.66 0.86769
Target:  5'- cGUC--CAGCCGCCGGcgcGGccGCCCGuCa -3'
miRNA:   3'- -CAGacGUCGGCGGCC---UCuuUGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 113993 0.66 0.86769
Target:  5'- ---aGCAGCCguucgaggcGCCGGAGGagcGACUCGuACa -3'
miRNA:   3'- cagaCGUCGG---------CGGCCUCU---UUGGGC-UG- -5'
11024 5' -58.4 NC_002794.1 + 187613 0.66 0.86769
Target:  5'- cGUC-GCccagAGCCGCUGGAGAGGCgCa-- -3'
miRNA:   3'- -CAGaCG----UCGGCGGCCUCUUUGgGcug -5'
11024 5' -58.4 NC_002794.1 + 104424 0.66 0.866964
Target:  5'- -cCU-CGGCCGCCGGcccGGAcgccgccgcgggcGGCCCGAg -3'
miRNA:   3'- caGAcGUCGGCGGCC---UCU-------------UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 147620 0.66 0.865505
Target:  5'- -aCUgGCAGgCGUCGGAGAGgguccgcuaucuccGCUCGAUg -3'
miRNA:   3'- caGA-CGUCgGCGGCCUCUU--------------UGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 132907 0.66 0.864773
Target:  5'- -cCUGCGGCgGCCGGucacucguuCCCGGu -3'
miRNA:   3'- caGACGUCGgCGGCCucuuu----GGGCUg -5'
11024 5' -58.4 NC_002794.1 + 44410 0.66 0.860338
Target:  5'- gGUCUGacCGGCCGgCGccGAGcgGCUCGACg -3'
miRNA:   3'- -CAGAC--GUCGGCgGC--CUCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 53753 0.66 0.860338
Target:  5'- -gCUGCcGCCGCCGcugccggcggcGGGAcGCCCG-Cg -3'
miRNA:   3'- caGACGuCGGCGGC-----------CUCUuUGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 149865 0.66 0.858093
Target:  5'- ---aGCGGCCGCCcgcucGGGGGgucugggucaucguGACCCGGg -3'
miRNA:   3'- cagaCGUCGGCGG-----CCUCU--------------UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 63481 0.66 0.852789
Target:  5'- ---gGCGGCCGCCGucGAcGAcGCCgCGGCg -3'
miRNA:   3'- cagaCGUCGGCGGC--CU-CUuUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 70694 0.66 0.852789
Target:  5'- -cCUGUcGCCGCUGGGGGucccACCCa-- -3'
miRNA:   3'- caGACGuCGGCGGCCUCUu---UGGGcug -5'
11024 5' -58.4 NC_002794.1 + 94656 0.66 0.852789
Target:  5'- aUUUGUA-CCGCCGGcuguGCCCGGCc -3'
miRNA:   3'- cAGACGUcGGCGGCCucuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 96936 0.66 0.852024
Target:  5'- ---aGCAcGCCGUCGGAgucuccgGAGACCuCGGCc -3'
miRNA:   3'- cagaCGU-CGGCGGCCU-------CUUUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 52266 0.66 0.850488
Target:  5'- aUCgaGCAGCCcuucuaccuccuggGCCGcGAGAAacGCCUGGCc -3'
miRNA:   3'- cAGa-CGUCGG--------------CGGC-CUCUU--UGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 149681 0.66 0.845052
Target:  5'- cGUCgcGCucgacuGGCCGCgGGGGccGCCUGGCg -3'
miRNA:   3'- -CAGa-CG------UCGGCGgCCUCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 95596 0.66 0.845052
Target:  5'- aUCUacGCGG-CGCCGGAGcgcaucguGGACCUGAUg -3'
miRNA:   3'- cAGA--CGUCgGCGGCCUC--------UUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 86970 0.66 0.845052
Target:  5'- -gCUGCGGCgaGCUGcGAcGAggUCCGGCg -3'
miRNA:   3'- caGACGUCGg-CGGC-CU-CUuuGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.