miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 156192 0.67 0.777136
Target:  5'- cGUCaucGgAGUCGCCGGucGGAGGgCCGGCg -3'
miRNA:   3'- -CAGa--CgUCGGCGGCC--UCUUUgGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 144821 0.67 0.777136
Target:  5'- cGUCcgUGCacgcggacgAGCCGCUGGAGcgGGugCCGAUg -3'
miRNA:   3'- -CAG--ACG---------UCGGCGGCCUC--UUugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 33114 0.67 0.802881
Target:  5'- cGUgaGCGGCCGCgGGcagacgauccaccAGGugcugcggGACCCGACc -3'
miRNA:   3'- -CAgaCGUCGGCGgCC-------------UCU--------UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 147005 0.67 0.801143
Target:  5'- cGUCggcggcgGCGGCCGCCGGcgcucggucuaaggAcGAAGCCguCGGCg -3'
miRNA:   3'- -CAGa------CGUCGGCGGCC--------------U-CUUUGG--GCUG- -5'
11024 5' -58.4 NC_002794.1 + 102647 0.67 0.820764
Target:  5'- -gCUgGCGGCgCGCuCGGAGGAGCugCCGAg -3'
miRNA:   3'- caGA-CGUCG-GCG-GCCUCUUUG--GGCUg -5'
11024 5' -58.4 NC_002794.1 + 120061 0.67 0.820764
Target:  5'- ---gGCGGCCG-CGGAGGccGACgCGGCg -3'
miRNA:   3'- cagaCGUCGGCgGCCUCU--UUGgGCUG- -5'
11024 5' -58.4 NC_002794.1 + 133737 0.67 0.820764
Target:  5'- aUCUGCuGCCGuUCGGucgccugcAGGGuCCCGACu -3'
miRNA:   3'- cAGACGuCGGC-GGCC--------UCUUuGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 96751 0.67 0.812333
Target:  5'- cGUCUcgcaaGCGGCCGgCGGucGAGucGCCCGGg -3'
miRNA:   3'- -CAGA-----CGUCGGCgGCCu-CUU--UGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 67844 0.67 0.812333
Target:  5'- cGUCgcccgGC-GCCGCCGcGcGucACCCGGCg -3'
miRNA:   3'- -CAGa----CGuCGGCGGC-CuCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 45590 0.67 0.820764
Target:  5'- ---gGCAGCaggGCCGGGaacGGGACCCGGa -3'
miRNA:   3'- cagaCGUCGg--CGGCCU---CUUUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 64171 0.67 0.803747
Target:  5'- --gUGCAGCUGCUGaAGGcgcagacgcugcAGCCCGACc -3'
miRNA:   3'- cagACGUCGGCGGCcUCU------------UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 61522 0.67 0.803747
Target:  5'- -aCgGCGGCCGCCGGcGGccGCCgCGAa -3'
miRNA:   3'- caGaCGUCGGCGGCC-UCuuUGG-GCUg -5'
11024 5' -58.4 NC_002794.1 + 107756 0.67 0.811482
Target:  5'- ---cGCGcGCCGCUGGcuGGAGcgcgcucGCCCGGCg -3'
miRNA:   3'- cagaCGU-CGGCGGCC--UCUU-------UGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 6131 0.68 0.758766
Target:  5'- -gUUGCGGUCGaUCGGGGGgcggAGCCCGAg -3'
miRNA:   3'- caGACGUCGGC-GGCCUCU----UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 77878 0.68 0.758766
Target:  5'- -gCUGCAGCUGCucccgcccguacCGccGAAACCCGGCc -3'
miRNA:   3'- caGACGUCGGCG------------GCcuCUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 178800 0.68 0.758766
Target:  5'- ---gGCGGCuCGgcCCGGGGGGACCgGGCa -3'
miRNA:   3'- cagaCGUCG-GC--GGCCUCUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 78926 0.68 0.758766
Target:  5'- cGUCggGCAcccGCCGCCGGcAGGucACCCaGGCc -3'
miRNA:   3'- -CAGa-CGU---CGGCGGCC-UCUu-UGGG-CUG- -5'
11024 5' -58.4 NC_002794.1 + 70291 0.68 0.768009
Target:  5'- ---aGCAG--GCCGGGGggGCCCGGg -3'
miRNA:   3'- cagaCGUCggCGGCCUCuuUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 140313 0.68 0.768009
Target:  5'- -cCUGcCGGCgGCUGGAGAAGuCCUuGGCg -3'
miRNA:   3'- caGAC-GUCGgCGGCCUCUUU-GGG-CUG- -5'
11024 5' -58.4 NC_002794.1 + 181439 0.68 0.749418
Target:  5'- cGUCgGCgaggGGCCGcCCGGAGGAcgucuuACCCG-Cg -3'
miRNA:   3'- -CAGaCG----UCGGC-GGCCUCUU------UGGGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.