miRNA display CGI


Results 61 - 80 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 33336 0.68 0.739971
Target:  5'- -gCUGCAGUCGCUGGucGGcAACCUGGu -3'
miRNA:   3'- caGACGUCGGCGGCC--UCuUUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 56013 0.68 0.730435
Target:  5'- ---cGUAGCgGUCGGAcuGGAACUCGACg -3'
miRNA:   3'- cagaCGUCGgCGGCCU--CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 105925 0.68 0.749418
Target:  5'- ---cGCcGCCGCCGGAcGGGCUgGACg -3'
miRNA:   3'- cagaCGuCGGCGGCCUcUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 19540 0.68 0.749418
Target:  5'- ---cGCGGcCCGCCGGuGucgGACCCGGa -3'
miRNA:   3'- cagaCGUC-GGCGGCCuCu--UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 124843 0.68 0.749418
Target:  5'- aUCUGCauggcGGCCGCCgacuucaccauGGAGuucAGCUCGGCg -3'
miRNA:   3'- cAGACG-----UCGGCGG-----------CCUCu--UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 121918 0.68 0.768009
Target:  5'- cGUC-GCccGCCGCgGGGGAAGaggCCGACg -3'
miRNA:   3'- -CAGaCGu-CGGCGgCCUCUUUg--GGCUG- -5'
11024 5' -58.4 NC_002794.1 + 140313 0.68 0.768009
Target:  5'- -cCUGcCGGCgGCUGGAGAAGuCCUuGGCg -3'
miRNA:   3'- caGAC-GUCGgCGGCCUCUUU-GGG-CUG- -5'
11024 5' -58.4 NC_002794.1 + 70291 0.68 0.768009
Target:  5'- ---aGCAG--GCCGGGGggGCCCGGg -3'
miRNA:   3'- cagaCGUCggCGGCCUCuuUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 78926 0.68 0.758766
Target:  5'- cGUCggGCAcccGCCGCCGGcAGGucACCCaGGCc -3'
miRNA:   3'- -CAGa-CGU---CGGCGGCC-UCUu-UGGG-CUG- -5'
11024 5' -58.4 NC_002794.1 + 178800 0.68 0.758766
Target:  5'- ---gGCGGCuCGgcCCGGGGGGACCgGGCa -3'
miRNA:   3'- cagaCGUCG-GC--GGCCUCUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 77878 0.68 0.758766
Target:  5'- -gCUGCAGCUGCucccgcccguacCGccGAAACCCGGCc -3'
miRNA:   3'- caGACGUCGGCG------------GCcuCUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 6131 0.68 0.758766
Target:  5'- -gUUGCGGUCGaUCGGGGGgcggAGCCCGAg -3'
miRNA:   3'- caGACGUCGGC-GGCCUCU----UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 181439 0.68 0.749418
Target:  5'- cGUCgGCgaggGGCCGcCCGGAGGAcgucuuACCCG-Cg -3'
miRNA:   3'- -CAGaCG----UCGGC-GGCCUCUU------UGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 82001 0.68 0.749418
Target:  5'- cGUCgacgacGcCGGCCGCUGacgccGAAACCCGACg -3'
miRNA:   3'- -CAGa-----C-GUCGGCGGCcu---CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 58057 0.69 0.680727
Target:  5'- cGUCgGCGGCC-CCGGcggcggcgggacgGGcgGCCCGGCg -3'
miRNA:   3'- -CAGaCGUCGGcGGCC-------------UCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 119903 0.69 0.681715
Target:  5'- aUCUugGCGGCCgacGCCGGGGAcAUCCGcACg -3'
miRNA:   3'- cAGA--CGUCGG---CGGCCUCUuUGGGC-UG- -5'
11024 5' -58.4 NC_002794.1 + 107196 0.69 0.69157
Target:  5'- ---cGCcGCCGCCGGccucGCCCGGCg -3'
miRNA:   3'- cagaCGuCGGCGGCCucuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 78986 0.69 0.701377
Target:  5'- -gCUGCGGCCGCuccCGGAGu--CgCGGCg -3'
miRNA:   3'- caGACGUCGGCG---GCCUCuuuGgGCUG- -5'
11024 5' -58.4 NC_002794.1 + 180854 0.69 0.69157
Target:  5'- cGUCUaCGGCCucGUCGGAGGcggcgGAUCCGGCg -3'
miRNA:   3'- -CAGAcGUCGG--CGGCCUCU-----UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 38016 0.69 0.681715
Target:  5'- -cCUGCAGCgCuUCGGGaAAGCCCGGCa -3'
miRNA:   3'- caGACGUCG-GcGGCCUcUUUGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.