miRNA display CGI


Results 41 - 60 of 105 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 82001 0.68 0.749418
Target:  5'- cGUCgacgacGcCGGCCGCUGacgccGAAACCCGACg -3'
miRNA:   3'- -CAGa-----C-GUCGGCGGCcu---CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 56013 0.68 0.730435
Target:  5'- ---cGUAGCgGUCGGAcuGGAACUCGACg -3'
miRNA:   3'- cagaCGUCGgCGGCCU--CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 136713 0.68 0.739971
Target:  5'- --gUGCAGgCGCCGGu----CCCGGCg -3'
miRNA:   3'- cagACGUCgGCGGCCucuuuGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 33336 0.68 0.739971
Target:  5'- -gCUGCAGUCGCUGGucGGcAACCUGGu -3'
miRNA:   3'- caGACGUCGGCGGCC--UCuUUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 189072 0.68 0.743761
Target:  5'- cGUCUcgGGCCGCCGGuacAGAcacucgcuguucaggAGCCCGAa -3'
miRNA:   3'- -CAGAcgUCGGCGGCC---UCU---------------UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 19540 0.68 0.749418
Target:  5'- ---cGCGGcCCGCCGGuGucgGACCCGGa -3'
miRNA:   3'- cagaCGUC-GGCGGCCuCu--UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 124843 0.68 0.749418
Target:  5'- aUCUGCauggcGGCCGCCgacuucaccauGGAGuucAGCUCGGCg -3'
miRNA:   3'- cAGACG-----UCGGCGG-----------CCUCu--UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 72433 0.68 0.739971
Target:  5'- ---aGgAGCCGgCGGAGGGACCggCGGCg -3'
miRNA:   3'- cagaCgUCGGCgGCCUCUUUGG--GCUG- -5'
11024 5' -58.4 NC_002794.1 + 102197 0.68 0.739971
Target:  5'- -cCUgGCGGCCGCCGuGAcgGAGGCCCu-- -3'
miRNA:   3'- caGA-CGUCGGCGGC-CU--CUUUGGGcug -5'
11024 5' -58.4 NC_002794.1 + 105925 0.68 0.749418
Target:  5'- ---cGCcGCCGCCGGAcGGGCUgGACg -3'
miRNA:   3'- cagaCGuCGGCGGCCUcUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 62702 0.68 0.749418
Target:  5'- uGUCgGCGGCCGCCGacgcGACCCaGCg -3'
miRNA:   3'- -CAGaCGUCGGCGGCcucuUUGGGcUG- -5'
11024 5' -58.4 NC_002794.1 + 44727 0.68 0.749418
Target:  5'- cGUCggccgGC-GCCGCCGGAGGgcuaagacggcGAcucgucgccguCCCGACg -3'
miRNA:   3'- -CAGa----CGuCGGCGGCCUCU-----------UU-----------GGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 144821 0.67 0.777136
Target:  5'- cGUCcgUGCacgcggacgAGCCGCUGGAGcgGGugCCGAUg -3'
miRNA:   3'- -CAG--ACG---------UCGGCGGCCUC--UUugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 156192 0.67 0.777136
Target:  5'- cGUCaucGgAGUCGCCGGucGGAGGgCCGGCg -3'
miRNA:   3'- -CAGa--CgUCGGCGGCC--UCUUUgGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 147739 0.67 0.777136
Target:  5'- uGUCguugacGUGGCCGCUGGAGAGuuuUCUGAUc -3'
miRNA:   3'- -CAGa-----CGUCGGCGGCCUCUUu--GGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 48638 0.67 0.777136
Target:  5'- cGUCgggGCccgcgAGCCGCCGcAGAcucaGGCCCGAa -3'
miRNA:   3'- -CAGa--CG-----UCGGCGGCcUCU----UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 85139 0.67 0.786141
Target:  5'- cGUCUucuccaUAGCCGCCuucuAGAGACCCGAUg -3'
miRNA:   3'- -CAGAc-----GUCGGCGGcc--UCUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 80444 0.67 0.786141
Target:  5'- ---gGCGGCCGCCGGcccgucGGcgGCCCG-Cu -3'
miRNA:   3'- cagaCGUCGGCGGCC------UCuuUGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 178191 0.67 0.786141
Target:  5'- aGUCUGCGGCCGgcugacugcccUCGGu--AGCCuCGGCg -3'
miRNA:   3'- -CAGACGUCGGC-----------GGCCucuUUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 116858 0.67 0.801143
Target:  5'- uUCaUGCGGCgGCCGugucgcgcucgucaGGGggGCgCCGGCg -3'
miRNA:   3'- cAG-ACGUCGgCGGC--------------CUCuuUG-GGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.