miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 37538 0.82 0.150114
Target:  5'- -gCUGgcgaaCAGCCGCCGGAGggGCCaCGACc -3'
miRNA:   3'- caGAC-----GUCGGCGGCCUCuuUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 139679 0.77 0.27405
Target:  5'- aUUUGCAGCCGCCGGccguGCCgGACa -3'
miRNA:   3'- cAGACGUCGGCGGCCucuuUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 185061 0.77 0.286886
Target:  5'- gGUCUGCAGCCGCCGc---GGCCCGuCg -3'
miRNA:   3'- -CAGACGUCGGCGGCcucuUUGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 191648 0.77 0.300191
Target:  5'- cGUCcaGCAGcCCGCCGGGGGAcgGCgCCGGCa -3'
miRNA:   3'- -CAGa-CGUC-GGCGGCCUCUU--UG-GGCUG- -5'
11024 5' -58.4 NC_002794.1 + 34583 0.75 0.358131
Target:  5'- -cCUGCGGCUGCCcGAGuugGACCCGAUc -3'
miRNA:   3'- caGACGUCGGCGGcCUCu--UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 153664 0.75 0.365902
Target:  5'- cGUC--CGGCCGCCGGuuguGAGGCUCGACg -3'
miRNA:   3'- -CAGacGUCGGCGGCCu---CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 187583 0.75 0.365902
Target:  5'- cGUCggcGCGGCCGCCGucgcGAcGCCCGGCg -3'
miRNA:   3'- -CAGa--CGUCGGCGGCcu--CUuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 187451 0.73 0.486122
Target:  5'- cGUCUGCcGCCGCuCGGcGucGCUCGGCg -3'
miRNA:   3'- -CAGACGuCGGCG-GCCuCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 183859 0.72 0.495436
Target:  5'- cGUC-GCGGCCGUCGGGGccACCgcCGACa -3'
miRNA:   3'- -CAGaCGUCGGCGGCCUCuuUGG--GCUG- -5'
11024 5' -58.4 NC_002794.1 + 178009 0.72 0.50483
Target:  5'- cGUCUGCAGCgcuCGUCGGGGucaccgcCCCGAUc -3'
miRNA:   3'- -CAGACGUCG---GCGGCCUCuuu----GGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 68757 0.71 0.562626
Target:  5'- -aCUGagccgGGCCGCCGGGGcgccggacGCCCGGCu -3'
miRNA:   3'- caGACg----UCGGCGGCCUCuu------UGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 32250 0.71 0.582316
Target:  5'- -cCUGCAGCUGCUGGc---GCUCGACg -3'
miRNA:   3'- caGACGUCGGCGGCCucuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 95822 0.71 0.602141
Target:  5'- ---gGCGGCgGCCGGGGGAGCggCGGCg -3'
miRNA:   3'- cagaCGUCGgCGGCCUCUUUGg-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 69712 0.71 0.606118
Target:  5'- -aCUGCAucggcaccgucgaguGCCGCCGGAGc-GCCaCGGCc -3'
miRNA:   3'- caGACGU---------------CGGCGGCCUCuuUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 101513 0.7 0.612088
Target:  5'- --gUGCGGCacaCGCCGGcgGGguGCCCGGCg -3'
miRNA:   3'- cagACGUCG---GCGGCC--UCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 98734 0.7 0.612088
Target:  5'- gGUCg--AGCCGCUGGAGAAcaCCGACu -3'
miRNA:   3'- -CAGacgUCGGCGGCCUCUUugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 33454 0.7 0.622051
Target:  5'- cUCggGCGGCCGCCGGAcgcGCCC-ACg -3'
miRNA:   3'- cAGa-CGUCGGCGGCCUcuuUGGGcUG- -5'
11024 5' -58.4 NC_002794.1 + 175840 0.7 0.622051
Target:  5'- uUCUGC-GCCGUCGGGGucGCCgauCGACc -3'
miRNA:   3'- cAGACGuCGGCGGCCUCuuUGG---GCUG- -5'
11024 5' -58.4 NC_002794.1 + 114461 0.7 0.63202
Target:  5'- uGUCgccGCAGCCGCaGGAGAcccacgcguACCCGGu -3'
miRNA:   3'- -CAGa--CGUCGGCGgCCUCUu--------UGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 71101 0.7 0.63202
Target:  5'- gGUCgccgGCGGCCugGCCGGAGAGgcGCUCGu- -3'
miRNA:   3'- -CAGa---CGUCGG--CGGCCUCUU--UGGGCug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.