miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 134972 0.7 0.640992
Target:  5'- -cCUGCuuccacGCCGCCuccugacGGAGggGgCCGACg -3'
miRNA:   3'- caGACGu-----CGGCGG-------CCUCuuUgGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 34093 0.7 0.641989
Target:  5'- ---gGCAGCCGUCGG-GcgGCCCGGa -3'
miRNA:   3'- cagaCGUCGGCGGCCuCuuUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 115808 0.7 0.661898
Target:  5'- cGUCgGCAGaagcucuuCCGCCuGGAucggcGggGCCCGGCg -3'
miRNA:   3'- -CAGaCGUC--------GGCGG-CCU-----CuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 110269 0.69 0.671822
Target:  5'- cGUCgcgacgGCGGCCGCCGuccucGGGCCCGAg -3'
miRNA:   3'- -CAGa-----CGUCGGCGGCcuc--UUUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 58057 0.69 0.680727
Target:  5'- cGUCgGCGGCC-CCGGcggcggcgggacgGGcgGCCCGGCg -3'
miRNA:   3'- -CAGaCGUCGGcGGCC-------------UCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 119903 0.69 0.681715
Target:  5'- aUCUugGCGGCCgacGCCGGGGAcAUCCGcACg -3'
miRNA:   3'- cAGA--CGUCGG---CGGCCUCUuUGGGC-UG- -5'
11024 5' -58.4 NC_002794.1 + 38016 0.69 0.681715
Target:  5'- -cCUGCAGCgCuUCGGGaAAGCCCGGCa -3'
miRNA:   3'- caGACGUCG-GcGGCCUcUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 180854 0.69 0.69157
Target:  5'- cGUCUaCGGCCucGUCGGAGGcggcgGAUCCGGCg -3'
miRNA:   3'- -CAGAcGUCGG--CGGCCUCU-----UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 107196 0.69 0.69157
Target:  5'- ---cGCcGCCGCCGGccucGCCCGGCg -3'
miRNA:   3'- cagaCGuCGGCGGCCucuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 78986 0.69 0.701377
Target:  5'- -gCUGCGGCCGCuccCGGAGu--CgCGGCg -3'
miRNA:   3'- caGACGUCGGCG---GCCUCuuuGgGCUG- -5'
11024 5' -58.4 NC_002794.1 + 151202 0.69 0.720819
Target:  5'- uGUCUGCGcGCCGCCGGcu--ACCgGGu -3'
miRNA:   3'- -CAGACGU-CGGCGGCCucuuUGGgCUg -5'
11024 5' -58.4 NC_002794.1 + 56013 0.68 0.730435
Target:  5'- ---cGUAGCgGUCGGAcuGGAACUCGACg -3'
miRNA:   3'- cagaCGUCGgCGGCCU--CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 102197 0.68 0.739971
Target:  5'- -cCUgGCGGCCGCCGuGAcgGAGGCCCu-- -3'
miRNA:   3'- caGA-CGUCGGCGGC-CU--CUUUGGGcug -5'
11024 5' -58.4 NC_002794.1 + 61819 0.68 0.739971
Target:  5'- cUCcgGCGGCCGCCGGcGG---CCGGCg -3'
miRNA:   3'- cAGa-CGUCGGCGGCCuCUuugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 136713 0.68 0.739971
Target:  5'- --gUGCAGgCGCCGGu----CCCGGCg -3'
miRNA:   3'- cagACGUCgGCGGCCucuuuGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 33336 0.68 0.739971
Target:  5'- -gCUGCAGUCGCUGGucGGcAACCUGGu -3'
miRNA:   3'- caGACGUCGGCGGCC--UCuUUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 72433 0.68 0.739971
Target:  5'- ---aGgAGCCGgCGGAGGGACCggCGGCg -3'
miRNA:   3'- cagaCgUCGGCgGCCUCUUUGG--GCUG- -5'
11024 5' -58.4 NC_002794.1 + 189072 0.68 0.743761
Target:  5'- cGUCUcgGGCCGCCGGuacAGAcacucgcuguucaggAGCCCGAa -3'
miRNA:   3'- -CAGAcgUCGGCGGCC---UCU---------------UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 62702 0.68 0.749418
Target:  5'- uGUCgGCGGCCGCCGacgcGACCCaGCg -3'
miRNA:   3'- -CAGaCGUCGGCGGCcucuUUGGGcUG- -5'
11024 5' -58.4 NC_002794.1 + 44727 0.68 0.749418
Target:  5'- cGUCggccgGC-GCCGCCGGAGGgcuaagacggcGAcucgucgccguCCCGACg -3'
miRNA:   3'- -CAGa----CGuCGGCGGCCUCU-----------UU-----------GGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.