miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 105925 0.68 0.749418
Target:  5'- ---cGCcGCCGCCGGAcGGGCUgGACg -3'
miRNA:   3'- cagaCGuCGGCGGCCUcUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 19540 0.68 0.749418
Target:  5'- ---cGCGGcCCGCCGGuGucgGACCCGGa -3'
miRNA:   3'- cagaCGUC-GGCGGCCuCu--UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 44727 0.68 0.749418
Target:  5'- cGUCggccgGC-GCCGCCGGAGGgcuaagacggcGAcucgucgccguCCCGACg -3'
miRNA:   3'- -CAGa----CGuCGGCGGCCUCU-----------UU-----------GGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 62702 0.68 0.749418
Target:  5'- uGUCgGCGGCCGCCGacgcGACCCaGCg -3'
miRNA:   3'- -CAGaCGUCGGCGGCcucuUUGGGcUG- -5'
11024 5' -58.4 NC_002794.1 + 82001 0.68 0.749418
Target:  5'- cGUCgacgacGcCGGCCGCUGacgccGAAACCCGACg -3'
miRNA:   3'- -CAGa-----C-GUCGGCGGCcu---CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 78926 0.68 0.758766
Target:  5'- cGUCggGCAcccGCCGCCGGcAGGucACCCaGGCc -3'
miRNA:   3'- -CAGa-CGU---CGGCGGCC-UCUu-UGGG-CUG- -5'
11024 5' -58.4 NC_002794.1 + 178800 0.68 0.758766
Target:  5'- ---gGCGGCuCGgcCCGGGGGGACCgGGCa -3'
miRNA:   3'- cagaCGUCG-GC--GGCCUCUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 77878 0.68 0.758766
Target:  5'- -gCUGCAGCUGCucccgcccguacCGccGAAACCCGGCc -3'
miRNA:   3'- caGACGUCGGCG------------GCcuCUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 6131 0.68 0.758766
Target:  5'- -gUUGCGGUCGaUCGGGGGgcggAGCCCGAg -3'
miRNA:   3'- caGACGUCGGC-GGCCUCU----UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 70291 0.68 0.768009
Target:  5'- ---aGCAG--GCCGGGGggGCCCGGg -3'
miRNA:   3'- cagaCGUCggCGGCCUCuuUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 140313 0.68 0.768009
Target:  5'- -cCUGcCGGCgGCUGGAGAAGuCCUuGGCg -3'
miRNA:   3'- caGAC-GUCGgCGGCCUCUUU-GGG-CUG- -5'
11024 5' -58.4 NC_002794.1 + 121918 0.68 0.768009
Target:  5'- cGUC-GCccGCCGCgGGGGAAGaggCCGACg -3'
miRNA:   3'- -CAGaCGu-CGGCGgCCUCUUUg--GGCUG- -5'
11024 5' -58.4 NC_002794.1 + 144821 0.67 0.777136
Target:  5'- cGUCcgUGCacgcggacgAGCCGCUGGAGcgGGugCCGAUg -3'
miRNA:   3'- -CAG--ACG---------UCGGCGGCCUC--UUugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 156192 0.67 0.777136
Target:  5'- cGUCaucGgAGUCGCCGGucGGAGGgCCGGCg -3'
miRNA:   3'- -CAGa--CgUCGGCGGCC--UCUUUgGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 147739 0.67 0.777136
Target:  5'- uGUCguugacGUGGCCGCUGGAGAGuuuUCUGAUc -3'
miRNA:   3'- -CAGa-----CGUCGGCGGCCUCUUu--GGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 48638 0.67 0.777136
Target:  5'- cGUCgggGCccgcgAGCCGCCGcAGAcucaGGCCCGAa -3'
miRNA:   3'- -CAGa--CG-----UCGGCGGCcUCU----UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 85139 0.67 0.786141
Target:  5'- cGUCUucuccaUAGCCGCCuucuAGAGACCCGAUg -3'
miRNA:   3'- -CAGAc-----GUCGGCGGcc--UCUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 80444 0.67 0.786141
Target:  5'- ---gGCGGCCGCCGGcccgucGGcgGCCCG-Cu -3'
miRNA:   3'- cagaCGUCGGCGGCC------UCuuUGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 178191 0.67 0.786141
Target:  5'- aGUCUGCGGCCGgcugacugcccUCGGu--AGCCuCGGCg -3'
miRNA:   3'- -CAGACGUCGGC-----------GGCCucuUUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 58755 0.67 0.795014
Target:  5'- ---gGCAGCUGgCGGAGGAGCCgcugcUGGCc -3'
miRNA:   3'- cagaCGUCGGCgGCCUCUUUGG-----GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.