miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 58057 0.69 0.680727
Target:  5'- cGUCgGCGGCC-CCGGcggcggcgggacgGGcgGCCCGGCg -3'
miRNA:   3'- -CAGaCGUCGGcGGCC-------------UCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 58755 0.67 0.795014
Target:  5'- ---gGCAGCUGgCGGAGGAGCCgcugcUGGCc -3'
miRNA:   3'- cagaCGUCGGCgGCCUCUUUGG-----GCUG- -5'
11024 5' -58.4 NC_002794.1 + 61522 0.67 0.803747
Target:  5'- -aCgGCGGCCGCCGGcGGccGCCgCGAa -3'
miRNA:   3'- caGaCGUCGGCGGCC-UCuuUGG-GCUg -5'
11024 5' -58.4 NC_002794.1 + 61819 0.68 0.739971
Target:  5'- cUCcgGCGGCCGCCGGcGG---CCGGCg -3'
miRNA:   3'- cAGa-CGUCGGCGGCCuCUuugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 62702 0.68 0.749418
Target:  5'- uGUCgGCGGCCGCCGacgcGACCCaGCg -3'
miRNA:   3'- -CAGaCGUCGGCGGCcucuUUGGGcUG- -5'
11024 5' -58.4 NC_002794.1 + 63481 0.66 0.852789
Target:  5'- ---gGCGGCCGCCGucGAcGAcGCCgCGGCg -3'
miRNA:   3'- cagaCGUCGGCGGC--CU-CUuUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 64171 0.67 0.803747
Target:  5'- --gUGCAGCUGCUGaAGGcgcagacgcugcAGCCCGACc -3'
miRNA:   3'- cagACGUCGGCGGCcUCU------------UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 66804 0.66 0.829032
Target:  5'- ---cGCAGUCGcCCGGcaucgucaGGgcGCCCGGCg -3'
miRNA:   3'- cagaCGUCGGC-GGCC--------UCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 67015 0.66 0.834719
Target:  5'- aGUCcggcgGCGGCgGCCGGcucccgccgcgucgcGGACCCGGCg -3'
miRNA:   3'- -CAGa----CGUCGgCGGCCuc-------------UUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 67844 0.67 0.812333
Target:  5'- cGUCgcccgGC-GCCGCCGcGcGucACCCGGCg -3'
miRNA:   3'- -CAGa----CGuCGGCGGC-CuCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 68757 0.71 0.562626
Target:  5'- -aCUGagccgGGCCGCCGGGGcgccggacGCCCGGCu -3'
miRNA:   3'- caGACg----UCGGCGGCCUCuu------UGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 69712 0.71 0.606118
Target:  5'- -aCUGCAucggcaccgucgaguGCCGCCGGAGc-GCCaCGGCc -3'
miRNA:   3'- caGACGU---------------CGGCGGCCUCuuUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 70291 0.68 0.768009
Target:  5'- ---aGCAG--GCCGGGGggGCCCGGg -3'
miRNA:   3'- cagaCGUCggCGGCCUCuuUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 70694 0.66 0.852789
Target:  5'- -cCUGUcGCCGCUGGGGGucccACCCa-- -3'
miRNA:   3'- caGACGuCGGCGGCCUCUu---UGGGcug -5'
11024 5' -58.4 NC_002794.1 + 71073 0.66 0.83713
Target:  5'- ---aGCAGCCGCCGGGu---CCaGACg -3'
miRNA:   3'- cagaCGUCGGCGGCCUcuuuGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 71101 0.7 0.63202
Target:  5'- gGUCgccgGCGGCCugGCCGGAGAGgcGCUCGu- -3'
miRNA:   3'- -CAGa---CGUCGG--CGGCCUCUU--UGGGCug -5'
11024 5' -58.4 NC_002794.1 + 72433 0.68 0.739971
Target:  5'- ---aGgAGCCGgCGGAGGGACCggCGGCg -3'
miRNA:   3'- cagaCgUCGGCgGCCUCUUUGG--GCUG- -5'
11024 5' -58.4 NC_002794.1 + 77878 0.68 0.758766
Target:  5'- -gCUGCAGCUGCucccgcccguacCGccGAAACCCGGCc -3'
miRNA:   3'- caGACGUCGGCG------------GCcuCUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 78926 0.68 0.758766
Target:  5'- cGUCggGCAcccGCCGCCGGcAGGucACCCaGGCc -3'
miRNA:   3'- -CAGa-CGU---CGGCGGCC-UCUu-UGGG-CUG- -5'
11024 5' -58.4 NC_002794.1 + 78986 0.69 0.701377
Target:  5'- -gCUGCGGCCGCuccCGGAGu--CgCGGCg -3'
miRNA:   3'- caGACGUCGGCG---GCCUCuuuGgGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.