miRNA display CGI


Results 41 - 60 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 80444 0.67 0.786141
Target:  5'- ---gGCGGCCGCCGGcccgucGGcgGCCCG-Cu -3'
miRNA:   3'- cagaCGUCGGCGGCC------UCuuUGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 82001 0.68 0.749418
Target:  5'- cGUCgacgacGcCGGCCGCUGacgccGAAACCCGACg -3'
miRNA:   3'- -CAGa-----C-GUCGGCGGCcu---CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 82545 0.66 0.834719
Target:  5'- cGUCaGCGGCCcucccgccggcccaGCCGGcGAGGCC-GACg -3'
miRNA:   3'- -CAGaCGUCGG--------------CGGCCuCUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 84279 0.66 0.83713
Target:  5'- uUCcGCAGCUGCCGacGGGGAGCggCGGCg -3'
miRNA:   3'- cAGaCGUCGGCGGC--CUCUUUGg-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 85139 0.67 0.786141
Target:  5'- cGUCUucuccaUAGCCGCCuucuAGAGACCCGAUg -3'
miRNA:   3'- -CAGAc-----GUCGGCGGcc--UCUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 86868 0.66 0.83713
Target:  5'- gGUCUGCcGCgGCUaGGcAGuAGGCCCGAUc -3'
miRNA:   3'- -CAGACGuCGgCGG-CC-UC-UUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 86970 0.66 0.845052
Target:  5'- -gCUGCGGCgaGCUGcGAcGAggUCCGGCg -3'
miRNA:   3'- caGACGUCGg-CGGC-CU-CUuuGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 94656 0.66 0.852789
Target:  5'- aUUUGUA-CCGCCGGcuguGCCCGGCc -3'
miRNA:   3'- cAGACGUcGGCGGCCucuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 95596 0.66 0.845052
Target:  5'- aUCUacGCGG-CGCCGGAGcgcaucguGGACCUGAUg -3'
miRNA:   3'- cAGA--CGUCgGCGGCCUC--------UUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 95822 0.71 0.602141
Target:  5'- ---gGCGGCgGCCGGGGGAGCggCGGCg -3'
miRNA:   3'- cagaCGUCGgCGGCCUCUUUGg-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 96751 0.67 0.812333
Target:  5'- cGUCUcgcaaGCGGCCGgCGGucGAGucGCCCGGg -3'
miRNA:   3'- -CAGA-----CGUCGGCgGCCu-CUU--UGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 96936 0.66 0.852024
Target:  5'- ---aGCAcGCCGUCGGAgucuccgGAGACCuCGGCc -3'
miRNA:   3'- cagaCGU-CGGCGGCCU-------CUUUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 98734 0.7 0.612088
Target:  5'- gGUCg--AGCCGCUGGAGAAcaCCGACu -3'
miRNA:   3'- -CAGacgUCGGCGGCCUCUUugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 101513 0.7 0.612088
Target:  5'- --gUGCGGCacaCGCCGGcgGGguGCCCGGCg -3'
miRNA:   3'- cagACGUCG---GCGGCC--UCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 102197 0.68 0.739971
Target:  5'- -cCUgGCGGCCGCCGuGAcgGAGGCCCu-- -3'
miRNA:   3'- caGA-CGUCGGCGGC-CU--CUUUGGGcug -5'
11024 5' -58.4 NC_002794.1 + 102647 0.67 0.820764
Target:  5'- -gCUgGCGGCgCGCuCGGAGGAGCugCCGAg -3'
miRNA:   3'- caGA-CGUCG-GCG-GCCUCUUUG--GGCUg -5'
11024 5' -58.4 NC_002794.1 + 104424 0.66 0.866964
Target:  5'- -cCU-CGGCCGCCGGcccGGAcgccgccgcgggcGGCCCGAg -3'
miRNA:   3'- caGAcGUCGGCGGCC---UCU-------------UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 105275 0.66 0.829032
Target:  5'- aGUCgaGCAGCCagcguuGCuCGGGGu--CCCGGCu -3'
miRNA:   3'- -CAGa-CGUCGG------CG-GCCUCuuuGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 105925 0.68 0.749418
Target:  5'- ---cGCcGCCGCCGGAcGGGCUgGACg -3'
miRNA:   3'- cagaCGuCGGCGGCCUcUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 107196 0.69 0.69157
Target:  5'- ---cGCcGCCGCCGGccucGCCCGGCg -3'
miRNA:   3'- cagaCGuCGGCGGCCucuuUGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.