miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 191648 0.77 0.300191
Target:  5'- cGUCcaGCAGcCCGCCGGGGGAcgGCgCCGGCa -3'
miRNA:   3'- -CAGa-CGUC-GGCGGCCUCUU--UG-GGCUG- -5'
11024 5' -58.4 NC_002794.1 + 189072 0.68 0.743761
Target:  5'- cGUCUcgGGCCGCCGGuacAGAcacucgcuguucaggAGCCCGAa -3'
miRNA:   3'- -CAGAcgUCGGCGGCC---UCU---------------UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 187613 0.66 0.86769
Target:  5'- cGUC-GCccagAGCCGCUGGAGAGGCgCa-- -3'
miRNA:   3'- -CAGaCG----UCGGCGGCCUCUUUGgGcug -5'
11024 5' -58.4 NC_002794.1 + 187583 0.75 0.365902
Target:  5'- cGUCggcGCGGCCGCCGucgcGAcGCCCGGCg -3'
miRNA:   3'- -CAGa--CGUCGGCGGCcu--CUuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 187451 0.73 0.486122
Target:  5'- cGUCUGCcGCCGCuCGGcGucGCUCGGCg -3'
miRNA:   3'- -CAGACGuCGGCG-GCCuCuuUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 185755 0.66 0.86769
Target:  5'- cGUC--CAGCCGCCGGcgcGGccGCCCGuCa -3'
miRNA:   3'- -CAGacGUCGGCGGCC---UCuuUGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 185061 0.77 0.286886
Target:  5'- gGUCUGCAGCCGCCGc---GGCCCGuCg -3'
miRNA:   3'- -CAGACGUCGGCGGCcucuUUGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 183859 0.72 0.495436
Target:  5'- cGUC-GCGGCCGUCGGGGccACCgcCGACa -3'
miRNA:   3'- -CAGaCGUCGGCGGCCUCuuUGG--GCUG- -5'
11024 5' -58.4 NC_002794.1 + 181439 0.68 0.749418
Target:  5'- cGUCgGCgaggGGCCGcCCGGAGGAcgucuuACCCG-Cg -3'
miRNA:   3'- -CAGaCG----UCGGC-GGCCUCUU------UGGGCuG- -5'
11024 5' -58.4 NC_002794.1 + 180854 0.69 0.69157
Target:  5'- cGUCUaCGGCCucGUCGGAGGcggcgGAUCCGGCg -3'
miRNA:   3'- -CAGAcGUCGG--CGGCCUCU-----UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 178800 0.68 0.758766
Target:  5'- ---gGCGGCuCGgcCCGGGGGGACCgGGCa -3'
miRNA:   3'- cagaCGUCG-GC--GGCCUCUUUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 178191 0.67 0.786141
Target:  5'- aGUCUGCGGCCGgcugacugcccUCGGu--AGCCuCGGCg -3'
miRNA:   3'- -CAGACGUCGGC-----------GGCCucuUUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 178009 0.72 0.50483
Target:  5'- cGUCUGCAGCgcuCGUCGGGGucaccgcCCCGAUc -3'
miRNA:   3'- -CAGACGUCG---GCGGCCUCuuu----GGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 175840 0.7 0.622051
Target:  5'- uUCUGC-GCCGUCGGGGucGCCgauCGACc -3'
miRNA:   3'- cAGACGuCGGCGGCCUCuuUGG---GCUG- -5'
11024 5' -58.4 NC_002794.1 + 156192 0.67 0.777136
Target:  5'- cGUCaucGgAGUCGCCGGucGGAGGgCCGGCg -3'
miRNA:   3'- -CAGa--CgUCGGCGGCC--UCUUUgGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 153664 0.75 0.365902
Target:  5'- cGUC--CGGCCGCCGGuuguGAGGCUCGACg -3'
miRNA:   3'- -CAGacGUCGGCGGCCu---CUUUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 152906 0.66 0.83713
Target:  5'- -cCUGCAcGCCaucguCCGGAucGAGGCCCGGg -3'
miRNA:   3'- caGACGU-CGGc----GGCCU--CUUUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 151202 0.69 0.720819
Target:  5'- uGUCUGCGcGCCGCCGGcu--ACCgGGu -3'
miRNA:   3'- -CAGACGU-CGGCGGCCucuuUGGgCUg -5'
11024 5' -58.4 NC_002794.1 + 149865 0.66 0.858093
Target:  5'- ---aGCGGCCGCCcgcucGGGGGgucugggucaucguGACCCGGg -3'
miRNA:   3'- cagaCGUCGGCGG-----CCUCU--------------UUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 149681 0.66 0.845052
Target:  5'- cGUCgcGCucgacuGGCCGCgGGGGccGCCUGGCg -3'
miRNA:   3'- -CAGa-CG------UCGGCGgCCUCuuUGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.