miRNA display CGI


Results 21 - 40 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11024 5' -58.4 NC_002794.1 + 147739 0.67 0.777136
Target:  5'- uGUCguugacGUGGCCGCUGGAGAGuuuUCUGAUc -3'
miRNA:   3'- -CAGa-----CGUCGGCGGCCUCUUu--GGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 147620 0.66 0.865505
Target:  5'- -aCUgGCAGgCGUCGGAGAGgguccgcuaucuccGCUCGAUg -3'
miRNA:   3'- caGA-CGUCgGCGGCCUCUU--------------UGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 147005 0.67 0.801143
Target:  5'- cGUCggcggcgGCGGCCGCCGGcgcucggucuaaggAcGAAGCCguCGGCg -3'
miRNA:   3'- -CAGa------CGUCGGCGGCC--------------U-CUUUGG--GCUG- -5'
11024 5' -58.4 NC_002794.1 + 144821 0.67 0.777136
Target:  5'- cGUCcgUGCacgcggacgAGCCGCUGGAGcgGGugCCGAUg -3'
miRNA:   3'- -CAG--ACG---------UCGGCGGCCUC--UUugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 142987 0.66 0.86769
Target:  5'- -gCUGCGuGcCCGCCGuGgccAGGAACCCGGu -3'
miRNA:   3'- caGACGU-C-GGCGGC-C---UCUUUGGGCUg -5'
11024 5' -58.4 NC_002794.1 + 140313 0.68 0.768009
Target:  5'- -cCUGcCGGCgGCUGGAGAAGuCCUuGGCg -3'
miRNA:   3'- caGAC-GUCGgCGGCCUCUUU-GGG-CUG- -5'
11024 5' -58.4 NC_002794.1 + 139679 0.77 0.27405
Target:  5'- aUUUGCAGCCGCCGGccguGCCgGACa -3'
miRNA:   3'- cAGACGUCGGCGGCCucuuUGGgCUG- -5'
11024 5' -58.4 NC_002794.1 + 136713 0.68 0.739971
Target:  5'- --gUGCAGgCGCCGGu----CCCGGCg -3'
miRNA:   3'- cagACGUCgGCGGCCucuuuGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 134972 0.7 0.640992
Target:  5'- -cCUGCuuccacGCCGCCuccugacGGAGggGgCCGACg -3'
miRNA:   3'- caGACGu-----CGGCGG-------CCUCuuUgGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 133737 0.67 0.820764
Target:  5'- aUCUGCuGCCGuUCGGucgccugcAGGGuCCCGACu -3'
miRNA:   3'- cAGACGuCGGC-GGCC--------UCUUuGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 132907 0.66 0.864773
Target:  5'- -cCUGCGGCgGCCGGucacucguuCCCGGu -3'
miRNA:   3'- caGACGUCGgCGGCCucuuu----GGGCUg -5'
11024 5' -58.4 NC_002794.1 + 124843 0.68 0.749418
Target:  5'- aUCUGCauggcGGCCGCCgacuucaccauGGAGuucAGCUCGGCg -3'
miRNA:   3'- cAGACG-----UCGGCGG-----------CCUCu--UUGGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 123280 0.66 0.83713
Target:  5'- ---cGCGGUCGUCGcGGGAGACCUGcuGCu -3'
miRNA:   3'- cagaCGUCGGCGGC-CUCUUUGGGC--UG- -5'
11024 5' -58.4 NC_002794.1 + 121918 0.68 0.768009
Target:  5'- cGUC-GCccGCCGCgGGGGAAGaggCCGACg -3'
miRNA:   3'- -CAGaCGu-CGGCGgCCUCUUUg--GGCUG- -5'
11024 5' -58.4 NC_002794.1 + 121373 0.66 0.870575
Target:  5'- cGUCcgagccgGCcGCCGCCGGGaccgcggccggcgccGGGACCgCGACc -3'
miRNA:   3'- -CAGa------CGuCGGCGGCCU---------------CUUUGG-GCUG- -5'
11024 5' -58.4 NC_002794.1 + 120061 0.67 0.820764
Target:  5'- ---gGCGGCCG-CGGAGGccGACgCGGCg -3'
miRNA:   3'- cagaCGUCGGCgGCCUCU--UUGgGCUG- -5'
11024 5' -58.4 NC_002794.1 + 119903 0.69 0.681715
Target:  5'- aUCUugGCGGCCgacGCCGGGGAcAUCCGcACg -3'
miRNA:   3'- cAGA--CGUCGG---CGGCCUCUuUGGGC-UG- -5'
11024 5' -58.4 NC_002794.1 + 118232 0.66 0.83713
Target:  5'- ---cGCAGCU-CUGGAGGAugUCGGCg -3'
miRNA:   3'- cagaCGUCGGcGGCCUCUUugGGCUG- -5'
11024 5' -58.4 NC_002794.1 + 116858 0.67 0.801143
Target:  5'- uUCaUGCGGCgGCCGugucgcgcucgucaGGGggGCgCCGGCg -3'
miRNA:   3'- cAG-ACGUCGgCGGC--------------CUCuuUG-GGCUG- -5'
11024 5' -58.4 NC_002794.1 + 115808 0.7 0.661898
Target:  5'- cGUCgGCAGaagcucuuCCGCCuGGAucggcGggGCCCGGCg -3'
miRNA:   3'- -CAGaCGUC--------GGCGG-CCU-----CuuUGGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.