Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11024 | 5' | -58.4 | NC_002794.1 | + | 114461 | 0.7 | 0.63202 |
Target: 5'- uGUCgccGCAGCCGCaGGAGAcccacgcguACCCGGu -3' miRNA: 3'- -CAGa--CGUCGGCGgCCUCUu--------UGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 113993 | 0.66 | 0.86769 |
Target: 5'- ---aGCAGCCguucgaggcGCCGGAGGagcGACUCGuACa -3' miRNA: 3'- cagaCGUCGG---------CGGCCUCU---UUGGGC-UG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 110269 | 0.69 | 0.671822 |
Target: 5'- cGUCgcgacgGCGGCCGCCGuccucGGGCCCGAg -3' miRNA: 3'- -CAGa-----CGUCGGCGGCcuc--UUUGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 109434 | 0.66 | 0.829032 |
Target: 5'- -aCUGagGGaCCGCCGGGGucGCCCGcCc -3' miRNA: 3'- caGACg-UC-GGCGGCCUCuuUGGGCuG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 107756 | 0.67 | 0.811482 |
Target: 5'- ---cGCGcGCCGCUGGcuGGAGcgcgcucGCCCGGCg -3' miRNA: 3'- cagaCGU-CGGCGGCC--UCUU-------UGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 107196 | 0.69 | 0.69157 |
Target: 5'- ---cGCcGCCGCCGGccucGCCCGGCg -3' miRNA: 3'- cagaCGuCGGCGGCCucuuUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 105925 | 0.68 | 0.749418 |
Target: 5'- ---cGCcGCCGCCGGAcGGGCUgGACg -3' miRNA: 3'- cagaCGuCGGCGGCCUcUUUGGgCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 105275 | 0.66 | 0.829032 |
Target: 5'- aGUCgaGCAGCCagcguuGCuCGGGGu--CCCGGCu -3' miRNA: 3'- -CAGa-CGUCGG------CG-GCCUCuuuGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 104424 | 0.66 | 0.866964 |
Target: 5'- -cCU-CGGCCGCCGGcccGGAcgccgccgcgggcGGCCCGAg -3' miRNA: 3'- caGAcGUCGGCGGCC---UCU-------------UUGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 102647 | 0.67 | 0.820764 |
Target: 5'- -gCUgGCGGCgCGCuCGGAGGAGCugCCGAg -3' miRNA: 3'- caGA-CGUCG-GCG-GCCUCUUUG--GGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 102197 | 0.68 | 0.739971 |
Target: 5'- -cCUgGCGGCCGCCGuGAcgGAGGCCCu-- -3' miRNA: 3'- caGA-CGUCGGCGGC-CU--CUUUGGGcug -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 101513 | 0.7 | 0.612088 |
Target: 5'- --gUGCGGCacaCGCCGGcgGGguGCCCGGCg -3' miRNA: 3'- cagACGUCG---GCGGCC--UCuuUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 98734 | 0.7 | 0.612088 |
Target: 5'- gGUCg--AGCCGCUGGAGAAcaCCGACu -3' miRNA: 3'- -CAGacgUCGGCGGCCUCUUugGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 96936 | 0.66 | 0.852024 |
Target: 5'- ---aGCAcGCCGUCGGAgucuccgGAGACCuCGGCc -3' miRNA: 3'- cagaCGU-CGGCGGCCU-------CUUUGG-GCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 96751 | 0.67 | 0.812333 |
Target: 5'- cGUCUcgcaaGCGGCCGgCGGucGAGucGCCCGGg -3' miRNA: 3'- -CAGA-----CGUCGGCgGCCu-CUU--UGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 95822 | 0.71 | 0.602141 |
Target: 5'- ---gGCGGCgGCCGGGGGAGCggCGGCg -3' miRNA: 3'- cagaCGUCGgCGGCCUCUUUGg-GCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 95596 | 0.66 | 0.845052 |
Target: 5'- aUCUacGCGG-CGCCGGAGcgcaucguGGACCUGAUg -3' miRNA: 3'- cAGA--CGUCgGCGGCCUC--------UUUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 94656 | 0.66 | 0.852789 |
Target: 5'- aUUUGUA-CCGCCGGcuguGCCCGGCc -3' miRNA: 3'- cAGACGUcGGCGGCCucuuUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 86970 | 0.66 | 0.845052 |
Target: 5'- -gCUGCGGCgaGCUGcGAcGAggUCCGGCg -3' miRNA: 3'- caGACGUCGg-CGGC-CU-CUuuGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 86868 | 0.66 | 0.83713 |
Target: 5'- gGUCUGCcGCgGCUaGGcAGuAGGCCCGAUc -3' miRNA: 3'- -CAGACGuCGgCGG-CC-UC-UUUGGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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