Results 21 - 40 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11024 | 5' | -58.4 | NC_002794.1 | + | 44265 | 0.66 | 0.841905 |
Target: 5'- -gCU-CGGCCGCCGGGGAcggaggaguccgcGCCCGcCg -3' miRNA: 3'- caGAcGUCGGCGGCCUCUu------------UGGGCuG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 86970 | 0.66 | 0.845052 |
Target: 5'- -gCUGCGGCgaGCUGcGAcGAggUCCGGCg -3' miRNA: 3'- caGACGUCGg-CGGC-CU-CUuuGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 147620 | 0.66 | 0.865505 |
Target: 5'- -aCUgGCAGgCGUCGGAGAGgguccgcuaucuccGCUCGAUg -3' miRNA: 3'- caGA-CGUCgGCGGCCUCUU--------------UGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 132907 | 0.66 | 0.864773 |
Target: 5'- -cCUGCGGCgGCCGGucacucguuCCCGGu -3' miRNA: 3'- caGACGUCGgCGGCCucuuu----GGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 49120 | 0.66 | 0.86769 |
Target: 5'- -cCUGCAccggGaCCgGCCGGAGGucguugucGACCCGAa -3' miRNA: 3'- caGACGU----C-GG-CGGCCUCU--------UUGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 142987 | 0.66 | 0.86769 |
Target: 5'- -gCUGCGuGcCCGCCGuGgccAGGAACCCGGu -3' miRNA: 3'- caGACGU-C-GGCGGC-C---UCUUUGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 104424 | 0.66 | 0.866964 |
Target: 5'- -cCU-CGGCCGCCGGcccGGAcgccgccgcgggcGGCCCGAg -3' miRNA: 3'- caGAcGUCGGCGGCC---UCU-------------UUGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 185755 | 0.66 | 0.86769 |
Target: 5'- cGUC--CAGCCGCCGGcgcGGccGCCCGuCa -3' miRNA: 3'- -CAGacGUCGGCGGCC---UCuuUGGGCuG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 113993 | 0.66 | 0.86769 |
Target: 5'- ---aGCAGCCguucgaggcGCCGGAGGagcGACUCGuACa -3' miRNA: 3'- cagaCGUCGG---------CGGCCUCU---UUGGGC-UG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 187613 | 0.66 | 0.86769 |
Target: 5'- cGUC-GCccagAGCCGCUGGAGAGGCgCa-- -3' miRNA: 3'- -CAGaCG----UCGGCGGCCUCUUUGgGcug -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 44410 | 0.66 | 0.860338 |
Target: 5'- gGUCUGacCGGCCGgCGccGAGcgGCUCGACg -3' miRNA: 3'- -CAGAC--GUCGGCgGC--CUCuuUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 94656 | 0.66 | 0.852789 |
Target: 5'- aUUUGUA-CCGCCGGcuguGCCCGGCc -3' miRNA: 3'- cAGACGUcGGCGGCCucuuUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 95596 | 0.66 | 0.845052 |
Target: 5'- aUCUacGCGG-CGCCGGAGcgcaucguGGACCUGAUg -3' miRNA: 3'- cAGA--CGUCgGCGGCCUC--------UUUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 52266 | 0.66 | 0.850488 |
Target: 5'- aUCgaGCAGCCcuucuaccuccuggGCCGcGAGAAacGCCUGGCc -3' miRNA: 3'- cAGa-CGUCGG--------------CGGC-CUCUU--UGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 149681 | 0.66 | 0.845052 |
Target: 5'- cGUCgcGCucgacuGGCCGCgGGGGccGCCUGGCg -3' miRNA: 3'- -CAGa-CG------UCGGCGgCCUCuuUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 96936 | 0.66 | 0.852024 |
Target: 5'- ---aGCAcGCCGUCGGAgucuccgGAGACCuCGGCc -3' miRNA: 3'- cagaCGU-CGGCGGCCU-------CUUUGG-GCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 63481 | 0.66 | 0.852789 |
Target: 5'- ---gGCGGCCGCCGucGAcGAcGCCgCGGCg -3' miRNA: 3'- cagaCGUCGGCGGC--CU-CUuUGG-GCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 70694 | 0.66 | 0.852789 |
Target: 5'- -cCUGUcGCCGCUGGGGGucccACCCa-- -3' miRNA: 3'- caGACGuCGGCGGCCUCUu---UGGGcug -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 53753 | 0.66 | 0.860338 |
Target: 5'- -gCUGCcGCCGCCGcugccggcggcGGGAcGCCCG-Cg -3' miRNA: 3'- caGACGuCGGCGGC-----------CUCUuUGGGCuG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 149865 | 0.66 | 0.858093 |
Target: 5'- ---aGCGGCCGCCcgcucGGGGGgucugggucaucguGACCCGGg -3' miRNA: 3'- cagaCGUCGGCGG-----CCUCU--------------UUGGGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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