Results 41 - 60 of 105 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11024 | 5' | -58.4 | NC_002794.1 | + | 142987 | 0.66 | 0.86769 |
Target: 5'- -gCUGCGuGcCCGCCGuGgccAGGAACCCGGu -3' miRNA: 3'- caGACGU-C-GGCGGC-C---UCUUUGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 104424 | 0.66 | 0.866964 |
Target: 5'- -cCU-CGGCCGCCGGcccGGAcgccgccgcgggcGGCCCGAg -3' miRNA: 3'- caGAcGUCGGCGGCC---UCU-------------UUGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 185755 | 0.66 | 0.86769 |
Target: 5'- cGUC--CAGCCGCCGGcgcGGccGCCCGuCa -3' miRNA: 3'- -CAGacGUCGGCGGCC---UCuuUGGGCuG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 113993 | 0.66 | 0.86769 |
Target: 5'- ---aGCAGCCguucgaggcGCCGGAGGagcGACUCGuACa -3' miRNA: 3'- cagaCGUCGG---------CGGCCUCU---UUGGGC-UG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 187613 | 0.66 | 0.86769 |
Target: 5'- cGUC-GCccagAGCCGCUGGAGAGGCgCa-- -3' miRNA: 3'- -CAGaCG----UCGGCGGCCUCUUUGgGcug -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 63481 | 0.66 | 0.852789 |
Target: 5'- ---gGCGGCCGCCGucGAcGAcGCCgCGGCg -3' miRNA: 3'- cagaCGUCGGCGGC--CU-CUuUGG-GCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 96936 | 0.66 | 0.852024 |
Target: 5'- ---aGCAcGCCGUCGGAgucuccgGAGACCuCGGCc -3' miRNA: 3'- cagaCGU-CGGCGGCCU-------CUUUGG-GCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 71073 | 0.66 | 0.83713 |
Target: 5'- ---aGCAGCCGCCGGGu---CCaGACg -3' miRNA: 3'- cagaCGUCGGCGGCCUcuuuGGgCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 67015 | 0.66 | 0.834719 |
Target: 5'- aGUCcggcgGCGGCgGCCGGcucccgccgcgucgcGGACCCGGCg -3' miRNA: 3'- -CAGa----CGUCGgCGGCCuc-------------UUUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 118232 | 0.66 | 0.83713 |
Target: 5'- ---cGCAGCU-CUGGAGGAugUCGGCg -3' miRNA: 3'- cagaCGUCGGcGGCCUCUUugGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 84279 | 0.66 | 0.83713 |
Target: 5'- uUCcGCAGCUGCCGacGGGGAGCggCGGCg -3' miRNA: 3'- cAGaCGUCGGCGGC--CUCUUUGg-GCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 86868 | 0.66 | 0.83713 |
Target: 5'- gGUCUGCcGCgGCUaGGcAGuAGGCCCGAUc -3' miRNA: 3'- -CAGACGuCGgCGG-CC-UC-UUUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 58009 | 0.66 | 0.83713 |
Target: 5'- cGUCgccgccgggGCcGCCGCCGGc-GAACCCGcCg -3' miRNA: 3'- -CAGa--------CGuCGGCGGCCucUUUGGGCuG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 152906 | 0.66 | 0.83713 |
Target: 5'- -cCUGCAcGCCaucguCCGGAucGAGGCCCGGg -3' miRNA: 3'- caGACGU-CGGc----GGCCU--CUUUGGGCUg -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 123280 | 0.66 | 0.83713 |
Target: 5'- ---cGCGGUCGUCGcGGGAGACCUGcuGCu -3' miRNA: 3'- cagaCGUCGGCGGC-CUCUUUGGGC--UG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 44265 | 0.66 | 0.841905 |
Target: 5'- -gCU-CGGCCGCCGGGGAcggaggaguccgcGCCCGcCg -3' miRNA: 3'- caGAcGUCGGCGGCCUCUu------------UGGGCuG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 86970 | 0.66 | 0.845052 |
Target: 5'- -gCUGCGGCgaGCUGcGAcGAggUCCGGCg -3' miRNA: 3'- caGACGUCGg-CGGC-CU-CUuuGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 95596 | 0.66 | 0.845052 |
Target: 5'- aUCUacGCGG-CGCCGGAGcgcaucguGGACCUGAUg -3' miRNA: 3'- cAGA--CGUCgGCGGCCUC--------UUUGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 52266 | 0.66 | 0.850488 |
Target: 5'- aUCgaGCAGCCcuucuaccuccuggGCCGcGAGAAacGCCUGGCc -3' miRNA: 3'- cAGa-CGUCGG--------------CGGC-CUCUU--UGGGCUG- -5' |
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11024 | 5' | -58.4 | NC_002794.1 | + | 149681 | 0.66 | 0.845052 |
Target: 5'- cGUCgcGCucgacuGGCCGCgGGGGccGCCUGGCg -3' miRNA: 3'- -CAGa-CG------UCGGCGgCCUCuuUGGGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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