miRNA display CGI


Results 1 - 20 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 67728 0.66 0.882388
Target:  5'- cUCGGucccgGCGGCGGCCac-C-CGAGCCc -3'
miRNA:   3'- aAGCU-----UGUCGCCGGguaGaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 89455 0.66 0.882388
Target:  5'- aUCGGACGacccGCGGCuCCGgggaCUCcGGCCUg -3'
miRNA:   3'- aAGCUUGU----CGCCG-GGUa---GAGcUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 32266 0.66 0.882388
Target:  5'- cUCG-ACGGcCGGCCgAUCggCGAGCg- -3'
miRNA:   3'- aAGCuUGUC-GCCGGgUAGa-GCUCGga -5'
11025 5' -57.7 NC_002794.1 + 187339 0.66 0.882388
Target:  5'- --gGAGCAGCaGCCCGUCguUCGcGGUCa -3'
miRNA:   3'- aagCUUGUCGcCGGGUAG--AGC-UCGGa -5'
11025 5' -57.7 NC_002794.1 + 32828 0.66 0.876086
Target:  5'- gUCGGccucGCGGcCGGCUCAUCgguagcggcagcggcCGAGCCg -3'
miRNA:   3'- aAGCU----UGUC-GCCGGGUAGa--------------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 143120 0.66 0.875375
Target:  5'- cUCG-GCcGUGGCgCAggUCUCGGGCCa -3'
miRNA:   3'- aAGCuUGuCGCCGgGU--AGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 70876 0.66 0.875375
Target:  5'- -gCGGcaGCGGCGGCUC--CUCGAGCg- -3'
miRNA:   3'- aaGCU--UGUCGCCGGGuaGAGCUCGga -5'
11025 5' -57.7 NC_002794.1 + 18290 0.66 0.860722
Target:  5'- cUUCGAACcgAGCcGCCC-UCUCGAggGCCc -3'
miRNA:   3'- -AAGCUUG--UCGcCGGGuAGAGCU--CGGa -5'
11025 5' -57.7 NC_002794.1 + 36995 0.66 0.853092
Target:  5'- gUCGGcgaGGCGGaCCCGguagagcggCUCGGGCCc -3'
miRNA:   3'- aAGCUug-UCGCC-GGGUa--------GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 31892 0.66 0.853092
Target:  5'- cUCGAcCAGCGGCgCGUCgcugaUGAGCg- -3'
miRNA:   3'- aAGCUuGUCGCCGgGUAGa----GCUCGga -5'
11025 5' -57.7 NC_002794.1 + 54247 0.67 0.837254
Target:  5'- -cCGAGCGcGCGGUCCAcggcgccgCgUCGGGCCa -3'
miRNA:   3'- aaGCUUGU-CGCCGGGUa-------G-AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 10646 0.67 0.836442
Target:  5'- --gGAGCGGCGcgaGCCCGacgagcgUCUgGAGCCg -3'
miRNA:   3'- aagCUUGUCGC---CGGGU-------AGAgCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 81181 0.67 0.829059
Target:  5'- -cCGGACAGCGGCUgucUCUUGuacGGCCg -3'
miRNA:   3'- aaGCUUGUCGCCGGgu-AGAGC---UCGGa -5'
11025 5' -57.7 NC_002794.1 + 101655 0.67 0.829059
Target:  5'- -gCGGGCGGCGguuaGCCCGUC-CGAaacGCCg -3'
miRNA:   3'- aaGCUUGUCGC----CGGGUAGaGCU---CGGa -5'
11025 5' -57.7 NC_002794.1 + 107095 0.67 0.829059
Target:  5'- -aCGGGCGGgGGUgUGUCgcugCGAGCCg -3'
miRNA:   3'- aaGCUUGUCgCCGgGUAGa---GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 95239 0.67 0.829059
Target:  5'- gUUGGuucGCGGCCCcguuUgUCGAGCCUg -3'
miRNA:   3'- aAGCUuguCGCCGGGu---AgAGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 83181 0.67 0.829059
Target:  5'- gUCGAGC-GCGGCuucgCCAUCaacaacgcgcCGAGCCUg -3'
miRNA:   3'- aAGCUUGuCGCCG----GGUAGa---------GCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 37542 0.67 0.82823
Target:  5'- -gCGAACAGCcgccggaggGGCCacgaccgCGUCUCcGAGCCg -3'
miRNA:   3'- aaGCUUGUCG---------CCGG-------GUAGAG-CUCGGa -5'
11025 5' -57.7 NC_002794.1 + 55186 0.67 0.822378
Target:  5'- cUCGAgGCGGCGGCCCuaacaccggcgCggcggaggccggcggUCGAGCCg -3'
miRNA:   3'- aAGCU-UGUCGCCGGGua---------G---------------AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 180877 0.67 0.820691
Target:  5'- -gCGGAucCGGCGcGCCCgGUCUCG-GCCg -3'
miRNA:   3'- aaGCUU--GUCGC-CGGG-UAGAGCuCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.