miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 189546 0.67 0.812156
Target:  5'- gUCGAuccaccacAUGGCGGUCCcgCUCGgucGGCCg -3'
miRNA:   3'- aAGCU--------UGUCGCCGGGuaGAGC---UCGGa -5'
11025 5' -57.7 NC_002794.1 + 55186 0.67 0.822378
Target:  5'- cUCGAgGCGGCGGCCCuaacaccggcgCggcggaggccggcggUCGAGCCg -3'
miRNA:   3'- aAGCU-UGUCGCCGGGua---------G---------------AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 54247 0.67 0.837254
Target:  5'- -cCGAGCGcGCGGUCCAcggcgccgCgUCGGGCCa -3'
miRNA:   3'- aaGCUUGU-CGCCGGGUa-------G-AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 10646 0.67 0.836442
Target:  5'- --gGAGCGGCGcgaGCCCGacgagcgUCUgGAGCCg -3'
miRNA:   3'- aagCUUGUCGC---CGGGU-------AGAgCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 83181 0.67 0.829059
Target:  5'- gUCGAGC-GCGGCuucgCCAUCaacaacgcgcCGAGCCUg -3'
miRNA:   3'- aAGCUUGuCGCCG----GGUAGa---------GCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 95239 0.67 0.829059
Target:  5'- gUUGGuucGCGGCCCcguuUgUCGAGCCUg -3'
miRNA:   3'- aAGCUuguCGCCGGGu---AgAGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 107095 0.67 0.829059
Target:  5'- -aCGGGCGGgGGUgUGUCgcugCGAGCCg -3'
miRNA:   3'- aaGCUUGUCgCCGgGUAGa---GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 101655 0.67 0.829059
Target:  5'- -gCGGGCGGCGguuaGCCCGUC-CGAaacGCCg -3'
miRNA:   3'- aaGCUUGUCGC----CGGGUAGaGCU---CGGa -5'
11025 5' -57.7 NC_002794.1 + 81181 0.67 0.829059
Target:  5'- -cCGGACAGCGGCUgucUCUUGuacGGCCg -3'
miRNA:   3'- aaGCUUGUCGCCGGgu-AGAGC---UCGGa -5'
11025 5' -57.7 NC_002794.1 + 37542 0.67 0.82823
Target:  5'- -gCGAACAGCcgccggaggGGCCacgaccgCGUCUCcGAGCCg -3'
miRNA:   3'- aaGCUUGUCG---------CCGG-------GUAGAG-CUCGGa -5'
11025 5' -57.7 NC_002794.1 + 148373 0.67 0.820691
Target:  5'- aUCG-GCAGCgGGgCCAUCUgGAGCg- -3'
miRNA:   3'- aAGCuUGUCG-CCgGGUAGAgCUCGga -5'
11025 5' -57.7 NC_002794.1 + 180877 0.67 0.820691
Target:  5'- -gCGGAucCGGCGcGCCCgGUCUCG-GCCg -3'
miRNA:   3'- aaGCUU--GUCGC-CGGG-UAGAGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 187676 0.68 0.742695
Target:  5'- aUCGGGCgaugcgggucgAGCGGCCCGUUggccgucuccgucaCGGGCCg -3'
miRNA:   3'- aAGCUUG-----------UCGCCGGGUAGa-------------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 41254 0.68 0.757898
Target:  5'- -cCGAcgcCGGCGGCCCGUCgUCGcGCUc -3'
miRNA:   3'- aaGCUu--GUCGCCGGGUAG-AGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 189036 0.68 0.770975
Target:  5'- cUCGAccgccaGCGGCgGGCUgcgcgucgcguacggCGUCUCGGGCCg -3'
miRNA:   3'- aAGCU------UGUCG-CCGG---------------GUAGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 32163 0.68 0.776508
Target:  5'- -cCGAGCGGUGGCCCGcCU--GGCCc -3'
miRNA:   3'- aaGCUUGUCGCCGGGUaGAgcUCGGa -5'
11025 5' -57.7 NC_002794.1 + 282 0.68 0.776508
Target:  5'- --aGGACGGCGGCCCugg-CGcGCCg -3'
miRNA:   3'- aagCUUGUCGCCGGGuagaGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 130591 0.68 0.757898
Target:  5'- gUCGGGCAGCGcuauccGCCgAUCgUGGGCCg -3'
miRNA:   3'- aAGCUUGUCGC------CGGgUAGaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 183242 0.68 0.78563
Target:  5'- -cCGAcacGCGGCGGCCCGccaCUCGguacaguacAGCCa -3'
miRNA:   3'- aaGCU---UGUCGCCGGGUa--GAGC---------UCGGa -5'
11025 5' -57.7 NC_002794.1 + 183153 0.68 0.738855
Target:  5'- -gCGGACAcGCGGCCgGgcugCcCGAGCCg -3'
miRNA:   3'- aaGCUUGU-CGCCGGgUa---GaGCUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.