Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11025 | 5' | -57.7 | NC_002794.1 | + | 113642 | 0.77 | 0.28871 |
Target: 5'- cUCGAGCAGCGGCCCGgcgucCUCGGcGUCc -3' miRNA: 3'- aAGCUUGUCGCCGGGUa----GAGCU-CGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 53417 | 0.76 | 0.316262 |
Target: 5'- --aGAACAGCGGCCCGcUCUCGcucGCCc -3' miRNA: 3'- aagCUUGUCGCCGGGU-AGAGCu--CGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 131166 | 0.75 | 0.369132 |
Target: 5'- --aGcACGGC-GCCCGUCUCGAGCCg -3' miRNA: 3'- aagCuUGUCGcCGGGUAGAGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 44174 | 0.75 | 0.369929 |
Target: 5'- -gCGAGCGGCGGCUCGUCgacuccgggcgaagcCGGGCCg -3' miRNA: 3'- aaGCUUGUCGCCGGGUAGa--------------GCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 135889 | 0.75 | 0.361219 |
Target: 5'- cUCGGACAGCGGaaCAgguccCUCGAGCCg -3' miRNA: 3'- aAGCUUGUCGCCggGUa----GAGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 127100 | 0.74 | 0.419037 |
Target: 5'- --aGAGCGGCGGCUCGccgaugaacagCUCGAGCCg -3' miRNA: 3'- aagCUUGUCGCCGGGUa----------GAGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 118047 | 0.74 | 0.419037 |
Target: 5'- -gCGAGC-GUGGCCCGUCUCGcggaagacGGCCg -3' miRNA: 3'- aaGCUUGuCGCCGGGUAGAGC--------UCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 110270 | 0.74 | 0.419037 |
Target: 5'- gUCGcGACGGCGGCcgCCGUcCUCGGGCCc -3' miRNA: 3'- aAGC-UUGUCGCCG--GGUA-GAGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 108450 | 0.73 | 0.491518 |
Target: 5'- cUCGcGGCGGCGGCCCGcCggcaCGGGCCg -3' miRNA: 3'- aAGC-UUGUCGCCGGGUaGa---GCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 115833 | 0.72 | 0.510546 |
Target: 5'- aUCG-GCGG-GGCCCGgcgggCUCGGGCCUg -3' miRNA: 3'- aAGCuUGUCgCCGGGUa----GAGCUCGGA- -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 21397 | 0.72 | 0.529874 |
Target: 5'- cUCGGACAccGcCGGCuCCAcgaUCUCGAGCCc -3' miRNA: 3'- aAGCUUGU--C-GCCG-GGU---AGAGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 65818 | 0.72 | 0.529874 |
Target: 5'- uUUCGAuCAGCGccgaGCUCcUCUCGAGCCg -3' miRNA: 3'- -AAGCUuGUCGC----CGGGuAGAGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 44502 | 0.71 | 0.569273 |
Target: 5'- gUCucACGGCGGCCCAgacCGGGCCc -3' miRNA: 3'- aAGcuUGUCGCCGGGUagaGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 14492 | 0.71 | 0.619434 |
Target: 5'- gUUCGcGGCGGCGGCCCGcgCUCGcGGCgCUc -3' miRNA: 3'- -AAGC-UUGUCGCCGGGUa-GAGC-UCG-GA- -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 50766 | 0.71 | 0.619434 |
Target: 5'- -cCGGGCGGCGGCgacggcgCGUCUCGGGCg- -3' miRNA: 3'- aaGCUUGUCGCCGg------GUAGAGCUCGga -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 189247 | 0.71 | 0.613385 |
Target: 5'- aUCaGACAGCGGCCCAgcgggaucaacaccuUCUCGcAGCa- -3' miRNA: 3'- aAGcUUGUCGCCGGGU---------------AGAGC-UCGga -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 182955 | 0.71 | 0.609355 |
Target: 5'- cUCGAgccgACGGCGGCCgGcuccucgUUCGAGCCg -3' miRNA: 3'- aAGCU----UGUCGCCGGgUa------GAGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 19964 | 0.7 | 0.669818 |
Target: 5'- cUUCGAGCuGCGGCCgCccUUCGGGCUg -3' miRNA: 3'- -AAGCUUGuCGCCGG-GuaGAGCUCGGa -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 131565 | 0.7 | 0.669818 |
Target: 5'- gUCGGcGCGGC-GCCCGUCUUGAcgGCCUc -3' miRNA: 3'- aAGCU-UGUCGcCGGGUAGAGCU--CGGA- -5' |
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11025 | 5' | -57.7 | NC_002794.1 | + | 82450 | 0.7 | 0.679838 |
Target: 5'- cUCGGcACGGuCGGCCCGacCUCGAcGCCg -3' miRNA: 3'- aAGCU-UGUC-GCCGGGUa-GAGCU-CGGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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