miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 113642 0.77 0.28871
Target:  5'- cUCGAGCAGCGGCCCGgcgucCUCGGcGUCc -3'
miRNA:   3'- aAGCUUGUCGCCGGGUa----GAGCU-CGGa -5'
11025 5' -57.7 NC_002794.1 + 53417 0.76 0.316262
Target:  5'- --aGAACAGCGGCCCGcUCUCGcucGCCc -3'
miRNA:   3'- aagCUUGUCGCCGGGU-AGAGCu--CGGa -5'
11025 5' -57.7 NC_002794.1 + 135889 0.75 0.361219
Target:  5'- cUCGGACAGCGGaaCAgguccCUCGAGCCg -3'
miRNA:   3'- aAGCUUGUCGCCggGUa----GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 131166 0.75 0.369132
Target:  5'- --aGcACGGC-GCCCGUCUCGAGCCg -3'
miRNA:   3'- aagCuUGUCGcCGGGUAGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 44174 0.75 0.369929
Target:  5'- -gCGAGCGGCGGCUCGUCgacuccgggcgaagcCGGGCCg -3'
miRNA:   3'- aaGCUUGUCGCCGGGUAGa--------------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 110270 0.74 0.419037
Target:  5'- gUCGcGACGGCGGCcgCCGUcCUCGGGCCc -3'
miRNA:   3'- aAGC-UUGUCGCCG--GGUA-GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 127100 0.74 0.419037
Target:  5'- --aGAGCGGCGGCUCGccgaugaacagCUCGAGCCg -3'
miRNA:   3'- aagCUUGUCGCCGGGUa----------GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 118047 0.74 0.419037
Target:  5'- -gCGAGC-GUGGCCCGUCUCGcggaagacGGCCg -3'
miRNA:   3'- aaGCUUGuCGCCGGGUAGAGC--------UCGGa -5'
11025 5' -57.7 NC_002794.1 + 108450 0.73 0.491518
Target:  5'- cUCGcGGCGGCGGCCCGcCggcaCGGGCCg -3'
miRNA:   3'- aAGC-UUGUCGCCGGGUaGa---GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 115833 0.72 0.510546
Target:  5'- aUCG-GCGG-GGCCCGgcgggCUCGGGCCUg -3'
miRNA:   3'- aAGCuUGUCgCCGGGUa----GAGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 65818 0.72 0.529874
Target:  5'- uUUCGAuCAGCGccgaGCUCcUCUCGAGCCg -3'
miRNA:   3'- -AAGCUuGUCGC----CGGGuAGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 21397 0.72 0.529874
Target:  5'- cUCGGACAccGcCGGCuCCAcgaUCUCGAGCCc -3'
miRNA:   3'- aAGCUUGU--C-GCCG-GGU---AGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 44502 0.71 0.569273
Target:  5'- gUCucACGGCGGCCCAgacCGGGCCc -3'
miRNA:   3'- aAGcuUGUCGCCGGGUagaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 182955 0.71 0.609355
Target:  5'- cUCGAgccgACGGCGGCCgGcuccucgUUCGAGCCg -3'
miRNA:   3'- aAGCU----UGUCGCCGGgUa------GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 189247 0.71 0.613385
Target:  5'- aUCaGACAGCGGCCCAgcgggaucaacaccuUCUCGcAGCa- -3'
miRNA:   3'- aAGcUUGUCGCCGGGU---------------AGAGC-UCGga -5'
11025 5' -57.7 NC_002794.1 + 14492 0.71 0.619434
Target:  5'- gUUCGcGGCGGCGGCCCGcgCUCGcGGCgCUc -3'
miRNA:   3'- -AAGC-UUGUCGCCGGGUa-GAGC-UCG-GA- -5'
11025 5' -57.7 NC_002794.1 + 50766 0.71 0.619434
Target:  5'- -cCGGGCGGCGGCgacggcgCGUCUCGGGCg- -3'
miRNA:   3'- aaGCUUGUCGCCGg------GUAGAGCUCGga -5'
11025 5' -57.7 NC_002794.1 + 46241 0.7 0.648689
Target:  5'- cUCGc-CGGCGGCUCGUCcgcuuccUCGGGCCg -3'
miRNA:   3'- aAGCuuGUCGCCGGGUAG-------AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 40487 0.7 0.659768
Target:  5'- aUCGAACGGcCGGCgCucgccgCUCGAGUCa -3'
miRNA:   3'- aAGCUUGUC-GCCGgGua----GAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 114720 0.7 0.669818
Target:  5'- -gCGGcgGCGGCGGCuCCGgguUCgUCGAGCCg -3'
miRNA:   3'- aaGCU--UGUCGCCG-GGU---AG-AGCUCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.