miRNA display CGI


Results 21 - 40 of 73 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11025 5' -57.7 NC_002794.1 + 25536 0.7 0.669818
Target:  5'- cUCGAugAGcCGGCCaGUCUC-AGCCg -3'
miRNA:   3'- aAGCUugUC-GCCGGgUAGAGcUCGGa -5'
11025 5' -57.7 NC_002794.1 + 131565 0.7 0.669818
Target:  5'- gUCGGcGCGGC-GCCCGUCUUGAcgGCCUc -3'
miRNA:   3'- aAGCU-UGUCGcCGGGUAGAGCU--CGGA- -5'
11025 5' -57.7 NC_002794.1 + 114720 0.7 0.669818
Target:  5'- -gCGGcgGCGGCGGCuCCGgguUCgUCGAGCCg -3'
miRNA:   3'- aaGCU--UGUCGCCG-GGU---AG-AGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 82450 0.7 0.679838
Target:  5'- cUCGGcACGGuCGGCCCGacCUCGAcGCCg -3'
miRNA:   3'- aAGCU-UGUC-GCCGGGUa-GAGCU-CGGa -5'
11025 5' -57.7 NC_002794.1 + 53220 0.69 0.689819
Target:  5'- gUCGAGCGGCgaaacGGUCCGUCcUCG-GCCc -3'
miRNA:   3'- aAGCUUGUCG-----CCGGGUAG-AGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 104260 0.69 0.689819
Target:  5'- cUCGGGCAGCcgcucggccGGCaCCGugccgaacaggaUCUCGGGCCg -3'
miRNA:   3'- aAGCUUGUCG---------CCG-GGU------------AGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 180621 0.69 0.71945
Target:  5'- -aCGAcACGGCGGCCCAcccgcgCUccagacgaCGAGCCa -3'
miRNA:   3'- aaGCU-UGUCGCCGGGUa-----GA--------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 37960 0.69 0.71945
Target:  5'- cUCGcuCGGCGGCUCGUgguaCGAGCCg -3'
miRNA:   3'- aAGCuuGUCGCCGGGUAga--GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 131874 0.69 0.729193
Target:  5'- cUUGGGCGccGCGGCCuCAUCUCG-GUCg -3'
miRNA:   3'- aAGCUUGU--CGCCGG-GUAGAGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 79689 0.69 0.729193
Target:  5'- cUCGAGCAGCucgGGCCgCcgCUCGuGuCCUa -3'
miRNA:   3'- aAGCUUGUCG---CCGG-GuaGAGCuC-GGA- -5'
11025 5' -57.7 NC_002794.1 + 183153 0.68 0.738855
Target:  5'- -gCGGACAcGCGGCCgGgcugCcCGAGCCg -3'
miRNA:   3'- aaGCUUGU-CGCCGGgUa---GaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 86841 0.68 0.738855
Target:  5'- aUCGGGuCGGCGGCCCcgCcgggaUUGGGUCUg -3'
miRNA:   3'- aAGCUU-GUCGCCGGGuaG-----AGCUCGGA- -5'
11025 5' -57.7 NC_002794.1 + 116460 0.68 0.738855
Target:  5'- -aCGAAgAGCGGCCgGUuCUUGGuGCCg -3'
miRNA:   3'- aaGCUUgUCGCCGGgUA-GAGCU-CGGa -5'
11025 5' -57.7 NC_002794.1 + 187676 0.68 0.742695
Target:  5'- aUCGGGCgaugcgggucgAGCGGCCCGUUggccgucuccgucaCGGGCCg -3'
miRNA:   3'- aAGCUUG-----------UCGCCGGGUAGa-------------GCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 41254 0.68 0.757898
Target:  5'- -cCGAcgcCGGCGGCCCGUCgUCGcGCUc -3'
miRNA:   3'- aaGCUu--GUCGCCGGGUAG-AGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 130591 0.68 0.757898
Target:  5'- gUCGGGCAGCGcuauccGCCgAUCgUGGGCCg -3'
miRNA:   3'- aAGCUUGUCGC------CGGgUAGaGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 189036 0.68 0.770975
Target:  5'- cUCGAccgccaGCGGCgGGCUgcgcgucgcguacggCGUCUCGGGCCg -3'
miRNA:   3'- aAGCU------UGUCG-CCGG---------------GUAGAGCUCGGa -5'
11025 5' -57.7 NC_002794.1 + 32163 0.68 0.776508
Target:  5'- -cCGAGCGGUGGCCCGcCU--GGCCc -3'
miRNA:   3'- aaGCUUGUCGCCGGGUaGAgcUCGGa -5'
11025 5' -57.7 NC_002794.1 + 282 0.68 0.776508
Target:  5'- --aGGACGGCGGCCCugg-CGcGCCg -3'
miRNA:   3'- aagCUUGUCGCCGGGuagaGCuCGGa -5'
11025 5' -57.7 NC_002794.1 + 127814 0.68 0.776508
Target:  5'- -cCGAGCgAGC-GCCCGUCgucggccCGAGCCg -3'
miRNA:   3'- aaGCUUG-UCGcCGGGUAGa------GCUCGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.